| Harmonic analysis of large systems. I. Methodology BR Brooks, D Janežič, M Karplus Journal of computational chemistry 16 (12), 1522-1542, 1995 | 615 | 1995 |
| An improved branch and bound algorithm for the maximum clique problem J Konc, D Janezic Match Commun. Math. Comput. Chem., 569-590, 2007 | 342 | 2007 |
| ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment J Konc, D Janežič Bioinformatics 26 (9), 1160-1168, 2010 | 296 | 2010 |
| Graph-theoretical matrices in chemistry D Janezic, A Milicevic, S Nikolic, N Trinajstic CRC Press, 2015 | 240 | 2015 |
| Temperature dependence of water vibrational spectrum: a molecular dynamics simulation study M Praprotnik, D Janežič, J Mavri The Journal of Physical Chemistry A 108 (50), 11056-11062, 2004 | 194 | 2004 |
| Harmonic analysis of large systems. III. Comparison with molecular dynamics D Janežič, RM Venable, BR Brooks Journal of Computational Chemistry 16 (12), 1554-1566, 1995 | 143 | 1995 |
| Molecular dynamics integration and molecular vibrational theory. III. The infrared spectrum of water M Praprotnik, D Janežič The Journal of chemical physics 122 (17), 2005 | 124 | 2005 |
| Harmonic analysis of large systems. II. Comparison of different protein models D Janežič, BR Brooks Journal of Computational Chemistry 16 (12), 1543-1553, 1995 | 115 | 1995 |
| ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins J Konc, D Janežič Nucleic acids research 40 (W1), W214-W221, 2012 | 108 | 2012 |
| ProBiS: a web server for detection of structurally similar protein binding sites J Konc, D Janežič Nucleic acids research 38 (suppl_2), W436-W440, 2010 | 102 | 2010 |
| LiSiCA: a software for ligand-based virtual screening and its application for the discovery of butyrylcholinesterase inhibitors S Lešnik, T Štular, B Brus, D Knez, S Gobec, D Janezic, J Konc Journal of chemical information and modeling 55 (8), 1521-1528, 2015 | 90 | 2015 |
| ENZO: a web tool for derivation and evaluation of kinetic models of enzyme catalyzed reactions S Bevc, J Konc, J Stojan, M Hodošček, M Penca, M Praprotnik, D Janežič PLoS One 6 (7), e22265, 2011 | 86 | 2011 |
| ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites J Konc, D Janežič Nucleic acids research 42 (W1), W215-W220, 2014 | 79 | 2014 |
| ProBiS-CHARMMing: web interface for prediction and optimization of ligands in protein binding sites J Konc, BT Miller, T Štular, S Lesnik, HL Woodcock, BR Brooks, ... Journal of chemical information and modeling 55 (11), 2308-2314, 2015 | 74 | 2015 |
| Exact parallel maximum clique algorithm for general and protein graphs M Depolli, J Konc, K Rozman, R Trobec, D Janezic Journal of chemical information and modeling 53 (9), 2217-2228, 2013 | 71 | 2013 |
| Molecular dynamics integration and molecular vibrational theory. I. New symplectic integrators D Janežič, M Praprotnik, F Merzel The Journal of chemical physics 122 (17), 2005 | 67 | 2005 |
| ProBiS-database: precalculated binding site similarities and local pairwise alignments of PDB structures J Konc, T Česnik, JT Konc, M Penca, D Janežič Journal of chemical information and modeling 52 (2), 604-612, 2012 | 64 | 2012 |
| Protein− protein binding-sites prediction by protein surface structure conservation J Konc, D Janežič Journal of chemical information and modeling 47 (3), 940-944, 2007 | 64 | 2007 |
| Binding site comparison for function prediction and pharmaceutical discovery J Konc, D Janežič Current opinion in structural biology 25, 34-39, 2014 | 62 | 2014 |
| Nonpeptidic selective inhibitors of the chymotrypsin‐like (β5 i) subunit of the immunoproteasome I Sosič, M Gobec, B Brus, D Knez, M Živec, J Konc, S Lešnik, M Ogrizek, ... Angewandte Chemie International Edition 55 (19), 5745-5748, 2016 | 58 | 2016 |
