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Robert Riley
Robert Riley
DOE Joint Genome Institute
Verified email at lbl.gov
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Year
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
D Floudas, M Binder, R Riley, K Barry, RA Blanchette, B Henrissat, ...
Science 336 (6089), 1715-1719, 2012
17922012
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo, R Ohm, R Otillar, R Riley, ...
Nucleic acids research 42 (D1), D699-D704, 2014
13552014
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, ...
Nature genetics 47 (4), 410-415, 2015
9992015
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
R Riley, AA Salamov, DW Brown, LG Nagy, D Floudas, BW Held, ...
Proceedings of the National Academy of Sciences 111 (27), 9923-9928, 2014
7442014
The plant cell wall–decomposing machinery underlies the functional diversity of forest fungi
DC Eastwood, D Floudas, M Binder, A Majcherczyk, P Schneider, A Aerts, ...
Science 333 (6043), 762-765, 2011
6242011
The genome portal of the department of energy joint genome institute
IV Grigoriev, H Nordberg, I Shabalov, A Aerts, M Cantor, D Goodstein, ...
Nucleic acids research 40 (D1), D26-D32, 2012
6042012
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
RP De Vries, R Riley, A Wiebenga, G Aguilar-Osorio, S Amillis, ...
Genome biology 18, 1-45, 2017
4582017
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
E Morin, A Kohler, AR Baker, M Foulongne-Oriol, V Lombard, LG Nagye, ...
Proceedings of the National Academy of Sciences 109 (43), 17501-17506, 2012
4492012
Phylogenetic and phylogenomic overview of the Polyporales
M Binder, A Justo, R Riley, A Salamov, F Lopez-Giraldez, E Sjökvist, ...
Mycologia 105 (6), 1350-1373, 2013
3662013
Comparative genomics of biotechnologically important yeasts
R Riley, S Haridas, KH Wolfe, MR Lopes, CT Hittinger, M Göker, ...
Proceedings of the National Academy of Sciences 113 (35), 9882-9887, 2016
3332016
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
E Fernandez-Fueyo, FJ Ruiz-Dueñas, P Ferreira, D Floudas, DS Hibbett, ...
Proceedings of the National Academy of Sciences 109 (14), 5458-5463, 2012
3212012
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
3062020
TB database: an integrated platform for tuberculosis research
TBK Reddy, R Riley, F Wymore, P Montgomery, D DeCaprio, R Engels, ...
Nucleic acids research 37 (suppl_1), D499-D508, 2009
2852009
Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities
LG Nagy, R Riley, A Tritt, C Adam, C Daum, D Floudas, H Sun, JS Yadav, ...
Molecular biology and evolution 33 (4), 959-970, 2016
2482016
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature Ecology & Evolution 3 (4), 668-678, 2019
2312019
Inferring protein domain interactions from databases of interacting proteins
R Riley, C Lee, C Sabatti, D Eisenberg
Genome biology 6, 1-17, 2005
1932005
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
D Floudas, BW Held, R Riley, LG Nagy, G Koehler, AS Ransdell, ...
Fungal Genetics and Biology 76, 78-92, 2015
1862015
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
TC Vesth, JL Nybo, S Theobald, JC Frisvad, TO Larsen, KF Nielsen, ...
Nature Genetics 50 (12), 1688-1695, 2018
1832018
Assessing the impact of alternative splicing on domain interactions in the human proteome
A Resch, Y Xing, B Modrek, M Gorlick, R Riley, C Lee
Journal of proteome research 3 (1), 76-83, 2004
1772004
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
G Sipos, AN Prasanna, MC Walter, E O’Connor, B Bálint, K Krizsán, ...
Nature ecology & evolution 1 (12), 1931-1941, 2017
1562017
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