Patrick Pedrioli
Patrick Pedrioli
Programme Leader at SCILLS, CLS Dundee
Verified email at
Cited by
Cited by
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains
CH Emmerich, A Ordureau, S Strickson, JSC Arthur, PGA Pedrioli, ...
Proceedings of the National Academy of Sciences 110 (38), 15247-15252, 2013
Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast
B Bodenmiller, S Wanka, C Kraft, J Urban, D Campbell, PG Pedrioli, ...
Science signaling 3 (153), rs4-rs4, 2010
A high-quality catalog of the Drosophila melanogaster proteome
E Brunner, CH Ahrens, S Mohanty, H Baetschmann, S Loevenich, ...
Nature biotechnology 25 (5), 576-583, 2007
Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA
S Leidel, PGA Pedrioli, T Bucher, R Brost, M Costanzo, A Schmidt, ...
Nature 458 (7235), 228-232, 2009
Phosphorylation of CRTC3 by the salt-inducible kinases controls the interconversion of classically activated and regulatory macrophages
K Clark, KF MacKenzie, K Petkevicius, Y Kristariyanto, J Zhang, HG Choi, ...
Proceedings of the National Academy of Sciences 109 (42), 16986-16991, 2012
PGE2 induces macrophage IL-10 production and a regulatory-like phenotype via a protein kinase A–SIK–CRTC3 pathway
KF MacKenzie, K Clark, S Naqvi, VA McGuire, G Nöehren, Y Kristariyanto, ...
The Journal of Immunology 190 (2), 565-577, 2013
PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells
B Bodenmiller, J Malmstrom, B Gerrits, D Campbell, H Lam, A Schmidt, ...
Molecular systems biology 3 (1), 139, 2007
The IkappaB kinase family phosphorylates the Parkinson’s disease kinase LRRK2 at Ser935 and Ser910 during Toll-like receptor signaling
N Dzamko, F Inesta-Vaquera, J Zhang, C Xie, H Cai, S Arthur, L Tan, ...
PloS one 7 (6), e39132, 2012
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ...
Nature methods 14 (9), 921-927, 2017
Trans-proteomic pipeline: a pipeline for proteomic analysis
PGA Pedrioli
Proteome Bioinformatics, 213-238, 2010
tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding
VAN Rezgui, K Tyagi, N Ranjan, AL Konevega, J Mittelstaet, MV Rodnina, ...
Proceedings of the National Academy of Sciences 110 (30), 12289-12294, 2013
Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software
PGA Pedrioli, B Raught, XD Zhang, R Rogers, J Aitchison, M Matunis, ...
Nature methods 3 (7), 533-539, 2006
Phosphorylation of Parkin at Serine65 is essential for activation: elaboration of a Miro1 substrate-based assay of Parkin E3 ligase activity
A Kazlauskaite, V Kelly, C Johnson, C Baillie, CJ Hastie, M Peggie, ...
Open biology 4 (3), 130213, 2014
The SysteMHC atlas project
W Shao, PGA Pedrioli, W Wolski, C Scurtescu, E Schmid, JA Vizcaíno, ...
Nucleic acids research 46 (D1), D1237-D1247, 2018
A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry
X Li, PGA Pedrioli, J Eng, D Martin, EC Yi, H Lee, R Aebersold
Analytical Chemistry 76 (13), 3856-3860, 2004
Ubiquitylation-dependent localization of PLK1 in mitosis
J Beck, S Maerki, M Posch, T Metzger, A Persaud, H Scheel, K Hofmann, ...
Nature cell biology 15 (4), 430-439, 2013
An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells
B Bodenmiller, LN Mueller, PGA Pedrioli, D Pflieger, MA Jünger, JK Eng, ...
Molecular BioSystems 3 (4), 275-286, 2007
Hydrophilic strong anion exchange (hSAX) chromatography for highly orthogonal peptide separation of complex proteomes
MS Ritorto, K Cook, K Tyagi, PGA Pedrioli, M Trost
Journal of proteome research 12 (6), 2449-2457, 2013
RNAi‐based screening identifies the Mms22L–Nfkbil2 complex as a novel regulator of DNA replication in human cells
W Piwko, MH Olma, M Held, JN Bianco, PGA Pedrioli, K Hofmann, ...
The EMBO journal 29 (24), 4210-4222, 2010
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