| decoupleR: ensemble of computational methods to infer biological activities from omics data P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... Bioinformatics Advances 2 (1), vbac016, 2022 | 148 | 2022 |
| Gene regulatory network inference in the era of single-cell multi-omics P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ... Nature Reviews Genetics 24 (11), 739-754, 2023 | 72 | 2023 |
| Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ... Nucleic Acids Research 51 (20), 10934-10949, 2023 | 24 | 2023 |
| GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks A Kamal, C Arnold, A Claringbould, R Moussa, NH Servaas, M Kholmatov, ... Molecular Systems Biology 19 (6), e11627, 2023 | 21 | 2023 |
| Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities B Salovska, E Gao, S Müller‐Dott, W Li, CC Cordon, S Wang, A Dugourd, ... Clinical and Translational Medicine 13 (2), e1179, 2023 | 9 | 2023 |
| Hepatocytes reprogram liver macrophages involving control of TGF-β activation, influencing liver regeneration and injury SD Wolf, C Ehlting, S Müller-Dott, G Poschmann, P Petzsch, T Lautwein, ... Hepatology Communications 7 (8), e0208, 2023 | 1 | 2023 |
| Progression of MASLD goes along with significant changes of a recruited and TGFb sensitive macrophage population SD Wolf, MC Malms, S Müller-Dott, T Lautwein, S Hammad, K Köhrer, ... Zeitschrift für Gastroenterologie 62 (01), P3. 04, 2024 | | 2024 |
