A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5 (1), 4498, 2014 | 845 | 2014 |
Lytic to temperate switching of viral communities B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ... Nature 531 (7595), 466-470, 2016 | 567 | 2016 |
Computational approaches to predict bacteriophage–host relationships RA Edwards, K McNair, K Faust, J Raes, BE Dutilh FEMS microbiology reviews 40 (2), 258-272, 2016 | 452 | 2016 |
PHACTS, a computational approach to classifying the lifestyle of phages K McNair, BA Bailey, RA Edwards Bioinformatics 28 (5), 614-618, 2012 | 260 | 2012 |
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ... Nature microbiology 4 (10), 1727-1736, 2019 | 235 | 2019 |
PHANOTATE: a novel approach to gene identification in phage genomes K McNair, C Zhou, EA Dinsdale, B Souza, RA Edwards Bioinformatics 35 (22), 4537-4542, 2019 | 211 | 2019 |
Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome L Boling, DA Cuevas, JA Grasis, HS Kang, B Knowles, K Levi, H Maughan, ... Gut Microbes 11 (4), 721-734, 2020 | 89 | 2020 |
Phage genome annotation using the RAST pipeline K McNair, RK Aziz, GD Pusch, R Overbeek, BE Dutilh, R Edwards Bacteriophages: Methods and Protocols, Volume 3, 231-238, 2018 | 82 | 2018 |
Multivariate analysis of functional metagenomes EA Dinsdale, RA Edwards, BA Bailey, I Tuba, S Akhter, K McNair, ... Frontiers in genetics 4, 41, 2013 | 74 | 2013 |
A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage S Benler, AG Cobián-Güemes, K McNair, SH Hung, K Levi, R Edwards, ... Microbiome 6, 1-10, 2018 | 63 | 2018 |
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates CL Ecale Zhou, S Malfatti, J Kimbrel, C Philipson, K McNair, T Hamilton, ... Bioinformatics 35 (21), 4402-4404, 2019 | 55 | 2019 |
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun 5: 4498 BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... | 46 | 2014 |
Prophage genomics reveals patterns in phage genome organization and replication HS Kang, K McNair, DA Cuevas, BA Bailey, AM Segall, RA Edwards BioRxiv, 114819, 2017 | 42 | 2017 |
PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive PJ Torres, RA Edwards, KA McNair Bioinformatics 33 (15), 2389-2391, 2017 | 29 | 2017 |
Longitudinal analysis of the microbiome and metabolome in the 5xfAD mouse model of Alzheimer’s disease SJB Dunham, KA McNair, ED Adams, J Avelar-Barragan, S Forner, ... MBio 13 (6), e01794-22, 2022 | 23 | 2022 |
Draft genome sequence of the fish pathogen Piscirickettsia salmonis M Eppinger, K McNair, X Zogaj, EA Dinsdale, RA Edwards, KE Klose Genome announcements 1 (6), 10.1128/genomea. 00926-13, 2013 | 21 | 2013 |
MultiPhATE2: code for functional annotation and comparison of phage genomes CL Ecale Zhou, J Kimbrel, R Edwards, K McNair, BA Souza, S Malfatti G3 11 (5), jkab074, 2021 | 19 | 2021 |
Philympics 2021: prophage predictions perplex programs MJ Roach, K McNair, SK Giles, L Inglis, E Pargin, S Roux, P Decewicz, ... bioRxiv, 2021.06. 03.446868, 2021 | 18 | 2021 |
Predicting the capsid architecture of phages from metagenomic data DY Lee, C Bartels, K McNair, RA Edwards, MA Swairjo, A Luque Computational and structural biotechnology journal 20, 721-732, 2022 | 16 | 2022 |
GenomePeek—an online tool for prokaryotic genome and metagenome analysis K McNair, RA Edwards PeerJ 3, e1025, 2015 | 16 | 2015 |