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Full-length transcriptome assembly from RNA-Seq data without a reference genome
MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ...
Nature biotechnology 29 (7), 644-652, 2011
159072011
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ...
science 326 (5950), 289-293, 2009
79312009
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
M Guttman, I Amit, M Garber, C French, MF Lin, D Feldser, M Huarte, ...
Nature 458 (7235), 223-227, 2009
46292009
A unique microglia type associated with restricting development of Alzheimer’s disease
H Keren-Shaul, A Spinrad, A Weiner, O Matcovitch-Natan, ...
Cell 169 (7), 1276-1290. e17, 2017
32272017
Host microbiota constantly control maturation and function of microglia in the CNS
D Erny, AL Hrabě de Angelis, D Jaitin, P Wieghofer, O Staszewski, ...
Nature neuroscience 18 (7), 965-977, 2015
25762015
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
M Huarte, M Guttman, D Feldser, M Garber, MJ Koziol, ...
Cell 142 (3), 409-419, 2010
23262010
lincRNAs act in the circuitry controlling pluripotency and differentiation
M Guttman, J Donaghey, BW Carey, M Garber, JK Grenier, G Munson, ...
Nature 477 (7364), 295-300, 2011
21082011
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
M Liao, Y Liu, J Yuan, Y Wen, G Xu, J Zhao, L Cheng, J Li, X Wang, ...
Nature medicine 26 (6), 842-844, 2020
20612020
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
Y Lavin, D Winter, R Blecher-Gonen, E David, H Keren-Shaul, M Merad, ...
Cell 159 (6), 1312-1326, 2014
20032014
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data
MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ...
Nature biotechnology 29 (7), 644, 2011
18832011
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
DA Jaitin, E Kenigsberg, H Keren-Shaul, N Elefant, F Paul, I Zaretsky, ...
Science 343 (6172), 776-779, 2014
17772014
The human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
17732017
m6A mRNA methylation facilitates resolution of naÔve pluripotency toward differentiation
S Geula, S Moshitch-Moshkovitz, D Dominissini, AAF Mansour, N Kol, ...
Science 347 (6225), 1002-1006, 2015
13782015
Derivation of novel human ground state naive pluripotent stem cells
O Gafni, L Weinberger, AAF Mansour, YS Manor, E Chomsky, ...
Nature 504 (7479), 282-286, 2013
11162013
Transcriptional heterogeneity and lineage commitment in myeloid progenitors
F Paul, Y Arkin, A Giladi, DA Jaitin, E Kenigsberg, H Keren-Shaul, ...
Cell 163 (7), 1663-1677, 2015
10542015
Microglia development follows a stepwise program to regulate brain homeostasis
O Matcovitch-Natan, DR Winter, A Giladi, S Vargas Aguilar, A Spinrad, ...
Science 353 (6301), aad8670, 2016
10182016
Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses
Y Lavin, S Kobayashi, A Leader, ED Amir, N Elefant, C Bigenwald, ...
Cell 169 (4), 750-765. e17, 2017
9802017
Microbiota-modulated metabolites shape the intestinal microenvironment by regulating NLRP6 inflammasome signaling
M Levy, CA Thaiss, D Zeevi, L DohnalovŠ, G Zilberman-Schapira, ...
Cell 163 (6), 1428-1443, 2015
8012015
Single-cell spatial reconstruction reveals global division of labour in the mammalian liver
KB Halpern, R Shenhav, O Matcovitch-Natan, B Toth, D Lemze, M Golan, ...
Nature 542 (7641), 352-356, 2017
7912017
Chromatin state dynamics during blood formation
D Lara-Astiaso, A Weiner, E Lorenzo-Vivas, I Zaretsky, DA Jaitin, E David, ...
science 345 (6199), 943-949, 2014
7912014
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