Denis Kutnjak
Denis Kutnjak
National Instiute of Biology
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Cited by
Cited by
Next generation sequencing for detection and discovery of plant viruses and viroids: comparison of two approaches
A Pecman, D Kutnjak, I Gutiérrez-Aguirre, I Adams, A Fox, N Boonham, ...
Frontiers in microbiology 8, 1998, 2017
Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies
S Massart, M Chiumenti, K De Jonghe, R Glover, A Haegeman, I Koloniuk, ...
Phytopathology 109 (3), 488-497, 2019
High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe
A Steyer, I Gutiérrez-Aguire, M Kolenc, S Koren, D Kutnjak, M Pokorn, ...
Journal of clinical microbiology 51 (11), 3818-3825, 2013
Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population
D Kutnjak, M Rupar, I Gutierrez-Aguirre, T Curk, JF Kreuze, M Ravnikar
Journal of virology 89 (9), 4760-4769, 2015
High‐throughput sequencing technologies for plant pest diagnosis: challenges and opportunities
A Olmos, N Boonham, T Candresse, P Gentit, B Giovani, D Kutnjak, ...
EPPO Bulletin 48 (2), 219-224, 2018
Escaping to the summits: phylogeography and predicted range dynamics of Cerastium dinaricum, an endangered high mountain plant endemic to the western Balkan Peninsula
D Kutnjak, M Kuttner, M Niketić, S Dullinger, P Schönswetter, B Frajman
Molecular Phylogenetics and Evolution 78, 365-374, 2014
Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment
K Bačnik, D Kutnjak, A Pecman, N Mehle, MT Žnidarič, IG Aguirre, ...
Water research 177, 115628, 2020
Global advances in tomato virome research: current status and the impact of high-throughput sequencing
MPS Rivarez, A Vučurović, N Mehle, M Ravnikar, D Kutnjak
Frontiers in Microbiology 12, 671925, 2021
A primer on the analysis of high-throughput sequencing data for detection of plant viruses
D Kutnjak, L Tamisier, I Adams, N Boonham, T Candresse, M Chiumenti, ...
Microorganisms 9 (4), 841, 2021
Complete genome sequences of new divergent potato virus X isolates and discrimination between strains in a mixed infection using small RNAs sequencing approach
D Kutnjak, R Silvestre, W Cuellar, W Perez, G Müller, M Ravnikar, ...
Virus research 191, 45-50, 2014
Transmission modes affect the population structure of potato virus Y in potato
W da Silva, D Kutnjak, Y Xu, Y Xu, J Giovannoni, SF Elena, S Gray
PLoS Pathogens 16 (6), e1008608, 2020
Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia
T Naglič, D Rihtarič, P Hostnik, N Toplak, S Koren, U Kuhar, ...
BMC veterinary research 14, 1-10, 2018
In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem
MPS Rivarez, A Pecman, K Bačnik, O Maksimović, A Vučurović, G Seljak, ...
Microbiome 11 (1), 60, 2023
Water-mediated transmission of plant, animal, and human viruses
N Mehle, I Gutierrez-Aguirre, D Kutnjak, M Ravnikar
Advances in virus research 101, 85-128, 2018
Time-Sampled Population Sequencing Reveals the Interplay of Selection and Genetic Drift in Experimental Evolution of Potato Virus Y
D Kutnjak, SF Elena, M Ravnikar
Journal of Virology 91 (16), 10.1128/jvi. 00690-17, 2017
Systematic comparison of nanopore and illumina sequencing for the detection of plant viruses and viroids using total RNA sequencing approach
A Pecman, I Adams, I Gutiérrez-Aguirre, A Fox, N Boonham, M Ravnikar, ...
Frontiers in Microbiology 13, 883921, 2022
Spider webs as eDNA samplers: Biodiversity assessment across the tree of life
M Gregorič, D Kutnjak, K Bačnik, C Gostinčar, A Pecman, M Ravnikar, ...
Molecular Ecology Resources 22 (7), 2534-2545, 2022
New insights into the evolutionary and genomic landscape of molluscum contagiosum virus (MCV) based on nine MCV1 and six MCV2 complete genome sequences
TM Zorec, D Kutnjak, L Hošnjak, B Kušar, K Trčko, BJ Kocjan, Y Li, ...
Viruses 10 (11), 586, 2018
Detection of four new tomato viruses in Serbia using post hoc high-throughput sequencing analysis of samples from a large-scale field survey
A Vučurović, D Kutnjak, N Mehle, I Stanković, A Pecman, A Bulajić, ...
Plant Disease 105 (9), 2325-2332, 2021
First Report of Cucurbit Aphid-Borne Yellows Virus in Cucurbita pepo and Cucurbita maxima in Slovenia
N Mehle, D Kutnjak, N Jakoš, G Seljak, A Pecman, S Massart, M Ravnikar
Plant disease 104 (2), 599-599, 2020
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