| Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1658 | 2021 |
| Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017 | 1145 | 2017 |
| An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ... Genome biology 20, 1-19, 2019 | 890 | 2019 |
| Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG De Jesus, WM Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020 | 696 | 2020 |
| Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017 | 654 | 2017 |
| Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... Nature methods 16 (12), 1297-1305, 2019 | 636 | 2019 |
| Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, SC Hill, J Góes de Jesus, RS Aguiar, FCM Iani, ... Science 361 (6405), 894-899, 2018 | 318 | 2018 |
| Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2 CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ... PLoS biology 19 (5), e3001236, 2021 | 217 | 2021 |
| First case of SARS-COV-2 sequencing in cerebrospinal fluid of a patient with suspected demyelinating disease RB Domingues, MC Mendes-Correa, FBV de Moura Leite, EC Sabino, ... Journal of neurology 267, 3154-3156, 2020 | 151 | 2020 |
| Importation and early local transmission of COVID-19 in Brazil, 2020 JG Jesus, C Sacchi, DS Candido, IM Claro, FCS Sales, ER Manuli, ... Revista do Instituto de Medicina Tropical de Sao Paulo 62, e30, 2020 | 125 | 2020 |
| Neutralisation of SARS-CoV-2 lineage P. 1 by antibodies elicited through natural SARS-CoV-2 infection or vaccination with an inactivated SARS-CoV-2 vaccine: an immunological study WM Souza, MR Amorim, R Sesti-Costa, LD Coimbra, NS Brunetti, ... The Lancet Microbe 2 (10), e527-e535, 2021 | 116 | 2021 |
| Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon FG Naveca, I Claro, M Giovanetti, JG de Jesus, J Xavier, FCM Iani, ... PLoS neglected tropical diseases 13 (3), e0007065, 2019 | 110 | 2019 |
| Yellow fever virus reemergence and spread in Southeast Brazil, 2016–2019 M Giovanetti, MCL de Mendonça, V Fonseca, MA Mares-Guia, A Fabri, ... Journal of Virology 94 (1), 10.1128/jvi. 01623-19, 2019 | 97 | 2019 |
| Local Transmission of SARS-CoV-2 Lineage B. 1.1. 7, Brazil, December 2020 IM Claro, FC da Silva Sales, MS Ramundo, DS Candido, CAM Silva, ... Emerging infectious diseases 27 (3), 970, 2021 | 76 | 2021 |
| Brazil-UK Centre for Arbovirus Discovery DS Candido, IM Claro, JG Jesus, WM Souza, FRR Moreira, S Dellicour, ... Diagnosis, Genomics and Epidemiology (CADDE) Genomic Network, Ferguson NM …, 2020 | 54 | 2020 |
| Genomic and epidemiological surveillance of Zika virus in the Amazon region M Giovanetti, NR Faria, J Lourenço, JG de Jesus, J Xavier, IM Claro, ... Cell Reports 30 (7), 2275-2283. e7, 2020 | 54 | 2020 |
| Lipidomic analysis reveals serum alteration of plasmalogens in patients infected with ZIKA virus A Queiroz, IFD Pinto, M Lima, M Giovanetti, JG De Jesus, J Xavier, ... Frontiers in Microbiology 10, 753, 2019 | 52 | 2019 |
| Genomic surveillance of yellow fever virus epizootic in São Paulo, Brazil, 2016–2018 SC Hill, R de Souza, J Thézé, I Claro, RS Aguiar, L Abade, FCP Santos, ... PLoS pathogens 16 (8), e1008699, 2020 | 51 | 2020 |
| SARS-CoV-2 reinfection caused by the P. 1 lineage in Araraquara city, Sao Paulo State, Brazil CM Romano, AC Felix, AV Paula, JG Jesus, PS Andrade, D Cândido, ... Revista do Instituto de Medicina Tropical de São Paulo 63, e36, 2021 | 46 | 2021 |
| Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil TÉR Adelino, M Giovanetti, V Fonseca, J Xavier, ÁS de Abreu, ... Nature communications 12 (1), 2296, 2021 | 45 | 2021 |
