Jacob Beal

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Mirko ViroliFull Professor of Computer Science, Università di BolognaVerified email at unibo.it
Ron WeissProfessor of Biological Engineering, Massachusetts Institute of TechnologyVerified email at mit.edu
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Danilo PianiniSenior assistant professor (fixed-term), Alma Mater Studiorum Università di BolognaVerified email at unibo.it
Aaron AdlerBBN TechnologiesVerified email at bbn.com
Bryan BartleyScientistVerified email at sbolstandard.org
Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Goksel MisirliSenior Lecturer, Keele UniversityVerified email at keele.ac.uk
Ferruccio DamianiFull Professor of Compurer Science, University of TorinoVerified email at di.unito.it
Jonathan Bachrachadjunct assistant professor of computer science, uc berkeley universityVerified email at eecs.berkeley.edu
Matthew PocockComputing Science, Newcastle UniversityVerified email at ncl.ac.uk
James Alastair McLaughlinEMBL-EBIVerified email at ebi.ac.uk
Nicholas RoehnerRaytheon BBN TechnologiesVerified email at raytheon.com
Ernst OberortnerTakara Bio USAVerified email at takarabio.com
Giorgio AudritoResearch fellowVerified email at unito.it
Douglas DensmoreTegan Family Distinguished Fellow, Professor of Electrical and Computer Eng., Boston UniversityVerified email at bu.edu
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Kyle UsbeckSkydioVerified email at skydio.com
Traci HaddockPostdoctoral Research Associate, Boston UniversityVerified email at bu.edu
Soura DasguptaF Wendell Miller University of Iowa Foundation Distinguished Professor of ECEVerified email at engineering.uiowa.edu

Jacob Beal

Raytheon BBN

Verified email at bbn.com - Homepage

aggregate programming synthetic biology calibrated flow cytometry spatial computing engineered self-organization


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Cas9 gRNA engineering for genome editing, activation and repression S Kiani, A Chavez, M Tuttle, RN Hall, R Chari, D Ter-Ovanesyan, J Qian, ... Nature methods 12 (11), 1051-1054, 2015	365	2015
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014	329	2014
Infrastructure for engineered emergence on sensor/actuator networks J Beal, J Bachrach IEEE Intelligent Systems 21 (2), 10-19, 2006	250	2006
CRISPR transcriptional repression devices and layered circuits in mammalian cells S Kiani, J Beal, MR Ebrahimkhani, J Huh, RN Hall, Z Xie, Y Li, R Weiss Nature methods 11 (7), 723-726, 2014	239	2014
Aggregate programming for the internet of things J Beal, D Pianini, M Viroli Computer 48 (9), 22-30, 2015	229	2015
CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology SV Iverson, TL Haddock, J Beal, DM Densmore ACS synthetic biology 5 (1), 99-103, 2016	199	2016
Robust estimation of bacterial cell count from optical density J Beal, NG Farny, T Haddock-Angelli, V Selvarajah, GS Baldwin, ... Communications biology 3 (1), 512, 2020	181	2020
Organizing the aggregate: Languages for spatial computing J Beal, S Dulman, K Usbeck, M Viroli, N Correll Formal and Practical Aspects of Domain-Specific Languages: Recent …, 2013	169	2013
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks J Beal, T Lu, R Weiss PloS one 6 (8), e22490, 2011	134	2011
Protelis: practical aggregate programming D Pianini, M Viroli, J Beal Proceedings of the 30th Annual ACM Symposium on Applied Computing, 1846-1853, 2015	131	2015
Robotic fabricator AM Mozeika, A Adler, F Yaman-Sirin, J Beal US Patent App. 13/530,664, 2013	124	2013
An end-to-end workflow for engineering of biological networks from high-level specifications J Beal, R Weiss, D Densmore, A Adler, E Appleton, J Babb, S Bhatia, ... ACS synthetic biology 1 (8), 317-331, 2012	112	2012
Composable continuous-space programs for robotic swarms J Bachrach, J Beal, J McLurkin Neural Computing and Applications 19, 825-847, 2010	109	2010
Engineering resilient collective adaptive systems by self-stabilisation M Viroli, G Audrito, J Beal, F Damiani, D Pianini ACM Transactions on Modeling and Computer Simulation (TOMACS) 28 (2), 1-28, 2018	106	2018
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016	100	2016
SBOL visual: a graphical language for genetic designs JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ... PLoS biology 13 (12), e1002310, 2015	98	2015
Methods and apparatus for energy demand management JS Beal, JR Bachrach US Patent 8,271,147, 2012	91	2012
A higher-order calculus of computational fields G Audrito, M Viroli, F Damiani, D Pianini, J Beal ACM Transactions on Computational Logic (TOCL) 20 (1), 1-55, 2019	88	2019
From distributed coordination to field calculus and aggregate computing M Viroli, J Beal, F Damiani, G Audrito, R Casadei, D Pianini Journal of Logical and Algebraic Methods in Programming 109, 100486, 2019	84	2019
Fast self-healing gradients J Beal, J Bachrach, D Vickery, M Tobenkin Proceedings of the 2008 ACM symposium on Applied computing, 1969-1975, 2008	81	2008

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