Catherine Mooney

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Gianluca PollastriAssociate Professor, University College DublinVerified email at ucd.ie
Professor David C. HenshallDirector, FutureNeuro, SFI Research Centre, RCSIVerified email at rcsi.ie
Brett A. BeckerUniversity College DublinVerified email at ucd.ie
Denis ShieldsProfessor of Clinical Bioinformatics, University College DublinVerified email at ucd.ie
Lan WeiUniversity College DublinVerified email at ucd.ie
Rana M. RaoofUniversity of Mosul, College of MedicineVerified email at uomosul.edu.iq
Yuhan DuSchool of Computer Science, University College DublinVerified email at ucd.ie
Eva Jimenez-MateosRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Cristina R ReschkeLecturer, Royal College of Surgeons in IrelandVerified email at rcsi.com
Niamh M C ConnollyRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Gary BrennanAssistant Professor, University College DublinVerified email at ucd.ie
Claudia MazoAssistant Professor - Dublin City UniversityVerified email at dcu.ie
Alberto J.M. MartinCentro Ciencia & Vida, Facultad de Ingeniería, Arquitectura y Diseño Universidad San SebastiánVerified email at uss.cl
Sebastian BauerEpilepsiezentrum Frankfurt Rhein-Main, Universitätsklinikum Frankfurt, Klinik für Neurologie, GoetheVerified email at med.uni-frankfurt.de
Tobias EngelRoyal College of Surgeons in IrelandVerified email at rcsi.ie
Jochen H M PrehnRoyal College of Surgeons in Ireland University of Medicine and Health SciencesVerified email at rcsi.ie
ian walshBioprocessing technology instituteVerified email at bti.a-star.edu.sg
Felix RosenowGoethe-Universität FrankfurtVerified email at med.uni-frankfurt.de
Fionnuala McAuliffeProfessor of Obstetrics & Gynaecology, University College DublinVerified email at ucd.ie
Richard J. FitzGeraldDepartment of Life Sciences, University of Limerick, Limerick, Ireland.Verified email at ul.ie

Catherine Mooney

Associate Professor, School of Computer Science, University College Dublin

Verified email at ucd.ie

Bioinformatics Biomedical Informatics Computer Science Education Machine Learning


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Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity C Mooney, NJ Haslam, G Pollastri, DC Shields PLoS ONE 7 (10), e45012, 2012	409	2012
Current Challenges and Future Opportunities for XAI in Machine Learning-Based Clinical Decision Support Systems: A Systematic Review AM Antoniadi, Y Du, Y Guendouz, L Wei, C Mazo, BA Becker, C Mooney Applied Sciences 11 (11), 5088, 2021	391	2021
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information G Pollastri, AJM Martin, C Mooney, A Vullo BMC bioinformatics 8, 1-12, 2007	156	2007
Inhibition of dipeptidyl peptidase IV and xanthine oxidase by amino acids and dipeptides AB Nongonierma, C Mooney, DC Shields, RJ FitzGerald Food Chemistry 141 (1), 644-653, 2013	155	2013
CPPpred: prediction of cell penetrating peptides TA Holton, G Pollastri, DC Shields, C Mooney Bioinformatics 29 (23), 3094-3096, 2013	143	2013
In silico approaches to predict the potential of milk protein-derived peptides as dipeptidyl peptidase IV (DPP-IV) inhibitors AB Nongonierma, C Mooney, DC Shields, RJ FitzGerald Peptides 57, 43-51, 2014	134	2014
Effective compiler error message enhancement for novice programming students BA Becker, G Glanville, R Iwashima, C McDonnell, K Goslin, C Mooney Computer Science Education 26 (2-3), 148-175, 2016	127	2016
Cerebrospinal fluid microRNAs are potential biomarkers of temporal lobe epilepsy and status epilepticus R Raoof, EM Jimenez-Mateos, S Bauer, B Tackenberg, F Rosenow, ... Scientific reports 7 (1), 3328, 2017	119	2017
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins D Baú, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri BMC bioinformatics 7, 1-8, 2006	112	2006
microRNA targeting of the P2X7 purinoceptor opposes a contralateral epileptogenic focus in the hippocampus EM Jimenez-Mateos, M Arribas-Blazquez, A Sanz-Rodriguez, ... Scientific reports 5 (1), 17486, 2015	108	2015
Dual-center, dual-platform microRNA profiling identifies potential plasma biomarkers of adult temporal lobe epilepsy R Raoof, S Bauer, H El Naggar, NMC Connolly, GP Brennan, E Brindley, ... EBioMedicine 38, 127-141, 2018	100	2018
Prediction of short linear protein binding regions C Mooney, G Pollastri, DC Shields, NJ Haslam Journal of molecular biology 415 (1), 193-204, 2012	86	2012
Investigating the Impact of the COVID-19 Pandemic on Computing Students' Sense of Belonging C Mooney, BA Becker SIGCSE '21: Proceedings of the 52nd ACM Technical Symposium on Computer …, 2021	85	2021
Clinical decision support systems in breast cancer: a systematic review C Mazo, C Kearns, C Mooney, WM Gallagher Cancers 12 (2), 369, 2020	81	2020
PeptideLocator: prediction of bioactive peptides in protein sequences C Mooney, NJ Haslam, TA Holton, G Pollastri, DC Shields Bioinformatics 29 (9), 1120-1126, 2013	77	2013
SCLpred: protein subcellular localization prediction by N-to-1 neural networks C Mooney, YH Wang, G Pollastri Bioinformatics 27 (20), 2812-2819, 2011	77	2011
Predictive modelling of angiotensin converting enzyme inhibitory dipeptides R Norris, F Casey, RJ FitzGerald, D Shields, C Mooney Food Chemistry 133 (4), 1349-1354, 2012	76	2012
An explainable machine learning-based clinical decision support system for prediction of gestational diabetes mellitus Y Du, AR Rafferty, FM McAuliffe, L Wei, C Mooney Scientific Reports 12 (1), 1170, 2022	74	2022
Mutations in gamma adducin are associated with inherited cerebral palsy MC Kruer, T Jepperson, S Dutta, RD Steiner, E Cottenie, L Sanford, ... Annals of neurology 74 (6), 805-814, 2013	65	2013
On designing programming error messages for novices: Readability and its constituent factors P Denny, J Prather, BA Becker, C Mooney, J Homer, ZC Albrecht, ... Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems …, 2021	64	2021

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