Jonathan A Atkinson
Jonathan A Atkinson
Verified email at
Cited by
Cited by
Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
MP Pound, JA Atkinson, AJ Townsend, MH Wilson, M Griffiths, ...
GigaScience, 2017
Uncovering the hidden half of plants using new advances in root phenotyping
JA Atkinson, MP Pound, MJ Bennett, DM Wells
Current opinion in biotechnology 55, 1-8, 2019
Branching out in roots: uncovering form, function, and regulation
JA Atkinson, A Rasmussen, R Traini, U Vo▀, C Sturrock, SJ Mooney, ...
Plant Physiology 166 (2), 538-550, 2014
RootNav: navigating images of complex root architectures
MP Pound, AP French, JA Atkinson, DM Wells, MJ Bennett, T Pridmore
Plant physiology 162 (4), 1802-1814, 2013
Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat
JA Atkinson, LU Wingen, M Griffiths, MP Pound, O Gaju, MJ Foulkes, ...
Journal of Experimental Botany 66 (8), 2283-2292, 2015
Deep learning for multi-task plant phenotyping
MP Pound, JA Atkinson, DM Wells, TP Pridmore, AP French
Proceedings of the IEEE International Conference on Computer Visioná…, 2017
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures
R Yasrab, JA Atkinson, DM Wells, AP French, TP Pridmore, MP Pound
GigaScience 8 (11), giz123, 2019
Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots
S Passot, F Gnacko, D Moukouanga, M Lucas, S Guyomarc’h, BM Ortega, ...
Frontiers in plant science 7, 829, 2016
High throughput procedure utilising chlorophyll fluorescence imaging to phenotype dynamic photosynthesis and photoprotection in leaves under controlled gaseous conditions
L McAusland, JA Atkinson, T Lawson, EH Murchie
Plant Methods 15 (1), 1-15, 2019
Soil strength influences wheat root interactions with soil macropores
JA Atkinson, MJ Hawkesford, WR Whalley, H Zhou, SJ Mooney
Plant, cell & environment 43 (1), 235-245, 2020
Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation
U Mohammed, RS Caine, JA Atkinson, EL Harrison, D Wells, CC Chater, ...
Scientific reports 9 (1), 5584, 2019
The interaction between wheat roots and soil pores in structured field soil
H Zhou, WR Whalley, MJ Hawkesford, RW Ashton, B Atkinson, ...
Journal of Experimental Botany, 2021
An updated protocol for high throughput plant tissue sectioning
JA Atkinson, DM Wells
Frontiers in plant science 8, 1721, 2017
Demystifying roots: A need for clarification and extended concepts in root phenotyping
G Lobet, A Paez-Garcia, H Schneider, A Junker, JA Atkinson, S Tracy
Plant Science 282, 11-13, 2019
Field phenotyping for the future
JA Atkinson, RJ Jackson, AR Bentley, E Ober, DM Wells
Annu. Plant Rev. Online 1, 1-18, 2018
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies
JA Atkinson, G Lobet, M Noll, PE Meyer, M Griffiths, DM Wells
GigaScience 6 (10), gix084, 2017
Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency
K Kenobi, JA Atkinson, DM Wells, O Gaju, JG deSilva, MJ Foulkes, ...
Journal of Experimental Botany, 2017
The HK5 and HK6 cytokinin receptors mediate diverse developmental pathways in rice
CA Burr, J Sun, MV Yamburenko, A Willoughby, C Hodgens, SL Boeshore, ...
Development 147 (20), dev191734, 2020
X‐ray CT reveals 4D root system development and lateral root responses to nitrate in soil
M Griffiths, N Mellor, CJ Sturrock, BS Atkinson, J Johnson, S Mairhofer, ...
The Plant Phenome Journal 5 (1), e20036, 2022
Identification of QTL and underlying genes for root system architecture associated with nitrate nutrition in hexaploid wheat
M Griffiths, JA Atkinson, LJ Gardiner, R Swarup, MP Pound, MH Wilson, ...
Journal of Integrative Agriculture 21 (4), 917-932, 2022
The system can't perform the operation now. Try again later.
Articles 1–20