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Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at hms.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
Advances in neural information processing systems 33, 22118-22133, 2020
31062020
Orange: data mining toolbox in Python
J Dem¹ar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
28062013
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 2019
2701*2019
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
16872019
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
13722018
Scientific discovery in the age of artificial intelligence
H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ...
Nature 620 (7972), 47-60, 2023
1008*2023
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
6832017
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
6032019
Interpretability of machine learning‐based prediction models in healthcare
G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5 …, 2020
5102020
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
4922018
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
D Morselli Gysi, Ķ Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ...
Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021
4902021
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
4522018
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening
K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun
arXiv preprint arXiv:2004.08919, 2020
419*2020
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
3712018
Gnnguard: Defending graph neural networks against adversarial attacks
X Zhang, M Zitnik
Advances in neural information processing systems 33, 9263-9275, 2020
3342020
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
3272019
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
3212017
Therapeutics data commons: Machine learning datasets and tasks for drug discovery and development
K Huang, T Fu, W Gao, Y Zhao, Y Roohani, J Leskovec, CW Coley, ...
arXiv preprint arXiv:2102.09548, 2021
3102021
Self-supervised contrastive pre-training for time series via time-frequency consistency
X Zhang, Z Zhao, T Tsiligkaridis, M Zitnik
Advances in Neural Information Processing Systems 35, 3988-4003, 2022
2892022
Building a knowledge graph to enable precision medicine
P Chandak, K Huang, M Zitnik
Scientific Data 10 (1), 67, 2023
2702023
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