| A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions A Liwo, M Baranowski, C Czaplewski, E Go³a¶, Y He, D Jagie³a, P Krupa, ... Journal of molecular modeling 20, 1-15, 2014 | 143 | 2014 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 82 | 2021 |
| Lessons from application of the UNRES force field to predictions of structures of CASP10 targets Y He, MA Mozolewska, P Krupa, AK Sieradzan, TK Wirecki, A Liwo, ... Proceedings of the National Academy of Sciences 110 (37), 14936-14941, 2013 | 69 | 2013 |
| Performance of protein-structure predictions with the physics-based UNRES force field in CASP11 P Krupa, MA Mozolewska, M Wi¶niewska, Y Yin, Y He, AK Sieradzan, ... Bioinformatics 32 (21), 3270-3278, 2016 | 49 | 2016 |
| Molecular Docking-Based Study of Vasopressin Analogues Modified at Positions 2 and 3 with N-Methylphenylalanine: Influence on Receptor-Bound … MJ ¦lusarz, E Sikorska, R ¦lusarz, J Ciarkowski Journal of Medicinal Chemistry 49 (8), 2463-2469, 2006 | 43 | 2006 |
| Analysis of interactions responsible for vasopressin binding to human neurohypophyseal hormone receptors—molecular dynamics study of the activated receptor–vasopressin–Gα systems MJ ¦lusarz, A Gie³doń, R ¦lusarz, J Ciarkowski Journal of Peptide Science: An Official Publication of the European Peptide …, 2006 | 42 | 2006 |
| Molecular dynamics simulation of human neurohypophyseal hormone receptors complexed with oxytocin—modeling of an activated state MJ ¦lusarz, R ¦lusarz, J Ciarkowski Journal of peptide science: an official publication of the European Peptide …, 2006 | 33 | 2006 |
| Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors. A Gie³doń, R Ka¼mierkiewicz, R ¦lusarz, J Ciarkowski Journal of computer-aided molecular design 15, 1085-1104, 2001 | 29 | 2001 |
| A hypothesis for GPCR activation J Ciarkowski, M Witt, R ¦lusarz Journal of Molecular Modeling 11, 407-415, 2005 | 28 | 2005 |
| Investigation of mechanism of desmopressin binding in vasopressin V2 receptor versus vasopressin V1a and oxytocin receptors: Molecular dynamics simulation of the agonist‐bound … MJ ¦lusarz, R ¦lusarz, J Ciarkowski Biopolymers: Original Research on Biomolecules 81 (5), 321-338, 2006 | 25 | 2006 |
| Interaction of class AG protein-coupled receptors with G proteins. R Slusarz, J Ciarkowski Acta Biochimica Polonica 51 (1), 129-136, 2004 | 25 | 2004 |
| Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ... Journal of Molecular Graphics and Modelling 92, 154-166, 2019 | 21 | 2019 |
| Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets A Karczyńska, MA Mozolewska, P Krupa, A Gie³doń, KK Bojarski, ... Journal of Molecular Graphics and Modelling 83, 92-99, 2018 | 20 | 2018 |
| Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Gie³doń, M Kogut, ... Journal of Molecular Graphics and Modelling 108, 108008, 2021 | 18 | 2021 |
| Molecular modeling of Gram-positive bacteria peptidoglycan layer, selected glycopeptide antibiotics and vancomycin derivatives modified with sugar moieties R ¦lusarz, M Szulc, J Madaj Carbohydrate research 389, 154-164, 2014 | 17 | 2014 |
| Molecular modeling of the neurohypophyseal receptor/atosiban complexes MJ Slusarz, R Slusarz, RK Trojnar, K Wisniewski, J Ciarkowski Protein and Peptide Letters 10 (3), 295-302, 2003 | 17 | 2003 |
| Conformational stability of the full‐atom hexameric model of the ClpB chaperone from Escherichia coli S Ziźtkiewicz, MJ ¦lusarz, R ¦lusarz, K Liberek, S Rodziewicz‐Motowid³o Biopolymers: Original Research on Biomolecules 93 (1), 47-60, 2010 | 16 | 2010 |
| Extension of the UNRES coarse-grained force field to membrane proteins in the lipid bilayer K Ziȩba, M Ślusarz, R Ślusarz, A Liwo, C Czaplewski, AK Sieradzan The Journal of Physical Chemistry B 123 (37), 7829-7839, 2019 | 13 | 2019 |
| Study of new oxytocin antagonist barusiban (fe200 440) affinity toward human oxytocin receptor versus vasopressin V1A and V2 receptors–molecular dynamics simulation in popc bilayer MJ ¦lusarz, A Gie³doń, R ¦lusarz, J Trojnar, R Meadows, J Ciarkowski QSAR & Combinatorial Science 24 (5), 603-610, 2005 | 13 | 2005 |
| Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13 AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ... Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020 | 12 | 2020 |
