| Regulators of plant biomass degradation in ascomycetous fungi T Benocci, MV Aguilar-Pontes, M Zhou, B Seiboth, RP de Vries Biotechnology for biofuels 10, 1-25, 2017 | 190 | 2017 |
| Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications A Dilokpimol, MR Mäkelä, MV Aguilar-Pontes, I Benoit-Gelber, KS Hildén, ... Biotechnology for biofuels 9, 1-18, 2016 | 158 | 2016 |
| The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi MV Aguilar-Pontes, J Brandl, E McDonnell, K Strasser, TTM Nguyen, ... Studies in mycology 91 (1), 61-78, 2018 | 71 | 2018 |
| The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d‐galacturonic acid from pectin E Alazi, J Niu, JE Kowalczyk, M Peng, MV Aguilar Pontes, JAL Van Kan, ... FEBS letters 590 (12), 1804-1815, 2016 | 69 | 2016 |
| The molecular response of the white‐rot fungus Dichomitus squalens to wood and non‐woody biomass as examined by transcriptome and exoproteome analyses J Rytioja, K Hildén, M Di Falco, M Zhou, MV Aguilar‐Pontes, OM Sietiö, ... Environmental microbiology 19 (3), 1237-1250, 2017 | 53 | 2017 |
| In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics M Peng, MV Aguilar-Pontes, RP De Vries, MR Mäkelä Frontiers in Microbiology 9, 1045, 2018 | 43 | 2018 |
| Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes M Peng, MV Aguilar-Pontes, M Hainaut, B Henrissat, K Hildén, ... Fungal Genetics and Biology 112, 40-46, 2018 | 42 | 2018 |
| The fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreA MR Mäkelä, MV Aguilar-Pontes, D van Rossen-Uffink, M Peng, ... Scientific reports 8 (1), 6655, 2018 | 40 | 2018 |
| ARA1 regulates not only l‐arabinose but also d‐galactose catabolism in Trichoderma reesei T Benocci, MV Aguilar‑Pontes, RS Kun, B Seiboth, RP de Vries, P Daly FEBS letters 592 (1), 60-70, 2018 | 27 | 2018 |
| The pathway intermediate 2‐keto‐3‐deoxy‐L‐galactonate mediates the induction of genes involved in D‐galacturonic acid utilization in Aspergillus niger E Alazi, C Khosravi, TG Homan, S du Pré, M Arentshorst, M Di Falco, ... Febs Letters 591 (10), 1408-1418, 2017 | 27 | 2017 |
| A community-driven reconstruction of the Aspergillus niger metabolic network J Brandl, MV Aguilar-Pontes, P Schäpe, A Noerregaard, M Arvas, ... Fungal biology and biotechnology 5, 1-12, 2018 | 26 | 2018 |
| Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on … M Marinoviæ, MV Aguilar-Pontes, M Zhou, O Miettinen, RP de Vries, ... Fungal Genetics and Biology 112, 47-54, 2018 | 24 | 2018 |
| In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR C Khosravi, RS Kun, J Visser, MV Aguilar-Pontes, RP de Vries, ... BMC microbiology 17, 1-12, 2017 | 24 | 2017 |
| The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates MVA Pontes, A Patyshakuliyeva, H Post, E Jurak, K Hildén, M Altelaar, ... Fungal Genetics and Biology 112, 12-20, 2018 | 23 | 2018 |
| CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner M Peng, C Khosravi, RJM Lubbers, RS Kun, MVA Pontes, E Battaglia, ... The Cell Surface 7, 100050, 2021 | 20 | 2021 |
| (Post-) genomics approaches in fungal research MV Aguilar-Pontes, RP de Vries, M Zhou Briefings in functional genomics 13 (6), 424-439, 2014 | 18 | 2014 |
| The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum J Li, T Chroumpi, S Garrigues, RS Kun, J Meng, S Salazar-Cerezo, ... Journal of Fungi 8 (12), 1315, 2022 | 14 | 2022 |
| Revisiting a ‘simple’fungal metabolic pathway reveals redundancy, complexity and diversity T Chroumpi, M Peng, MV Aguilar‐Pontes, A Müller, M Wang, J Yan, ... Microbial biotechnology 14 (6), 2525-2537, 2021 | 14 | 2021 |
| Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass T Benocci, MV Aguilar-Pontes, RS Kun, RJM Lubbers, K Lail, M Wang, ... Biotechnology for biofuels 12, 1-20, 2019 | 14 | 2019 |
| Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator T Chroumpi, MV Aguilar-Pontes, M Peng, M Wang, A Lipzen, V Ng, ... Microbiological research 234, 126426, 2020 | 13 | 2020 |
Ronald P. de VriesWesterdijk Fungal Biodiversity InstituteVerified email at westerdijkinstitute.nl
