| Large-scale replicated field study of maize rhizosphere identifies heritable microbes WA Walters, Z Jin, N Youngblut, JG Wallace, J Sutter, W Zhang, ... Proceedings of the National Academy of Sciences 115 (28), 7368-7373, 2018 | 529 | 2018 |
| Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades ND Youngblut, GH Reischer, W Walters, N Schuster, C Walzer, G Stalder, ... Nature communications 10 (1), 1-15, 2019 | 465 | 2019 |
| Lake microbial communities are resilient after a whole-ecosystem disturbance A Shade, JS Read, ND Youngblut, N Fierer, R Knight, TK Kratz, NR Lottig, ... The ISME journal 6 (12), 2153-2167, 2012 | 245 | 2012 |
| Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins JL Moreno-Gallego, SP Chou, SC Di Rienzi, JK Goodrich, TD Spector, ... Cell host & microbe 25 (2), 261-272. e5, 2019 | 186 | 2019 |
| Human salivary amylase gene copy number impacts oral and gut microbiomes AC Poole, JK Goodrich, ND Youngblut, GG Luque, A Ruaud, JL Sutter, ... Cell host & microbe 25 (4), 553-564. e7, 2019 | 148 | 2019 |
| Codiversification of gut microbiota with humans TA Suzuki, JL Fitzstevens, VT Schmidt, H Enav, KE Huus, ... Science 377 (6612), 1328-1332, 2022 | 110 | 2022 |
| Soil characteristics and land-use drive bacterial community assembly patterns SE Barnett, ND Youngblut, DH Buckley FEMS Microbiology Ecology 96 (1), fiz194, 2020 | 90 | 2020 |
| Syntrophy via Interspecies H2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut A Ruaud, S Esquivel-Elizondo, J de la Cuesta-Zuluaga, JL Waters, ... MBio 11 (1), 10.1128/mbio. 03235-19, 2020 | 89 | 2020 |
| Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat DW Armitage, KL Gallagher, ND Youngblut, DH Buckley, SH Zinder Frontiers in Microbiology 3, 293, 2012 | 86 | 2012 |
| Large-scale metagenome assembly reveals novel animal-associated microbial genomes, biosynthetic gene clusters, and other genetic diversity ND Youngblut, J De la Cuesta-Zuluaga, GH Reischer, S Dauser, ... Msystems 5 (6), 10.1128/msystems. 01045-20, 2020 | 79 | 2020 |
| Plant phylogeny and life history shape rhizosphere bacterial microbiome of summer annuals in an agricultural field BD Emmett, ND Youngblut, DH Buckley, LE Drinkwater Frontiers in Microbiology 8, 2414, 2017 | 74 | 2017 |
| Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling SE Barnett, ND Youngblut, CN Koechli, DH Buckley Proceedings of the National Academy of Sciences 118 (47), e2115292118, 2021 | 57 | 2021 |
| HTSSIP: an R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments ND Youngblut, SE Barnett, DH Buckley PLoS One 13 (1), e0189616, 2018 | 49 | 2018 |
| Silent recognition of flagellins from human gut commensal bacteria by Toll-like receptor 5 SJ Clasen, MEW Bell, A Borbón, DH Lee, ZM Henseler, ... Science immunology 8 (79), eabq7001, 2023 | 48 | 2023 |
| SIPSim: a modeling toolkit to predict accuracy and aid design of DNA-SIP experiments ND Youngblut, SE Barnett, DH Buckley Frontiers in microbiology 9, 570, 2018 | 45 | 2018 |
| Vertebrate host phylogeny influences gut archaeal diversity ND Youngblut, GH Reischer, S Dauser, S Maisch, C Walzer, G Stalder, ... Nature microbiology 6 (11), 1443-1454, 2021 | 42 | 2021 |
| Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment ND Youngblut, JS Wirth, JR Henriksen, M Smith, H Simon, WW Metcalf, ... The ISME journal 9 (10), 2191-2205, 2015 | 38 | 2015 |
| Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets ND Youngblut, RE Ley PeerJ 9, e12198, 2021 | 37 | 2021 |
| DeepMAsED: evaluating the quality of metagenomic assemblies O Mineeva, M Rojas-Carulla, RE Ley, B Schölkopf, ND Youngblut Bioinformatics 36 (10), 3011-3017, 2020 | 35 | 2020 |
| Intra‐genomic variation in G+ C content and its implications for DNA stable isotope probing ND Youngblut, DH Buckley Environmental microbiology reports 6 (6), 767-775, 2014 | 35 | 2014 |
