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Halil Kilicoglu
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SemMedDB: a PubMed-scale repository of biomedical semantic predications
H Kilicoglu, D Shin, M Fiszman, G Rosemblat, TC Rindflesch
Bioinformatics 28 (23), 3158-3160, 2012
3322012
Recognizing speculative language in biomedical research articles: a linguistically motivated perspective
H Kilicoglu, S Bergler
BMC bioinformatics 9, 1-10, 2008
1572008
Abstraction summarization for managing the biomedical research literature
M Fiszman, TC Rindflesch, H Kilicoglu
Proceedings of the computational lexical semantics workshop at HLT-NAACL …, 2004
1552004
Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment
SM Humphrey, WJ Rogers, H Kilicoglu, D Demner‐Fushman, ...
Journal of the American Society for Information Science and Technology 57 (1 …, 2006
1382006
Syntactic dependency based heuristics for biological event extraction
H Kilicoglu, S Bergler
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task …, 2009
1172009
Semantic MEDLINE: An advanced information management application for biomedicine
TC Rindflesch, H Kilicoglu, M Fiszman, G Rosemblat, D Shin
Information services & use 31 (1-2), 15-21, 2011
1112011
Towards automatic recognition of scientifically rigorous clinical research evidence
H Kilicoglu, D Demner-Fushman, TC Rindflesch, NL Wilczynski, ...
Journal of the American Medical Informatics Association 16 (1), 25-31, 2009
1072009
Semantic MEDLINE: a web application for managing the results of PubMed Searches
H Kilicoglu, M Fiszman, A Rodriguez, D Shin, A Ripple, TC Rindflesch
Proceedings of the third international symposium for semantic mining in …, 2008
1032008
Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation
M Fiszman, D Demner-Fushman, H Kilicoglu, TC Rindflesch
Journal of biomedical informatics 42 (5), 801-813, 2009
992009
Semantic relations asserting the etiology of genetic diseases
TC Rindflesch, B Libbus, D Hristovski, AR Aronson, H Kilicoglu
AMIA Annual Symposium Proceedings 2003, 554, 2003
862003
Using the literature-based discovery paradigm to investigate drug mechanisms
CB Ahlers, D Hristovski, H Kilicoglu, TC Rindflesch
AMIA Annual Symposium Proceedings 2007, 6, 2007
812007
Constructing a semantic predication gold standard from the biomedical literature
H Kilicoglu, G Rosemblat, M Fiszman, TC Rindflesch
BMC bioinformatics 12 (1), 1-17, 2011
792011
Drug repurposing for COVID-19 via knowledge graph completion
R Zhang, D Hristovski, D Schutte, A Kastrin, M Fiszman, H Kilicoglu
Journal of biomedical informatics 115, 103696, 2021
732021
Using semantic predications to uncover drug–drug interactions in clinical data
R Zhang, MJ Cairelli, M Fiszman, G Rosemblat, H Kilicoglu, ...
Journal of biomedical informatics 49, 134-147, 2014
692014
Automatically classifying question types for consumer health questions
K Roberts, H Kilicoglu, M Fiszman, D Demner-Fushman
AMIA Annual Symposium Proceedings 2014, 1018, 2014
572014
Adapting a general semantic interpretation approach to biological event extraction
H Kilicoglu, S Bergler
Proceedings of BioNLP Shared Task 2011 Workshop, 173-182, 2011
552011
Biomedical text mining for research rigor and integrity: tasks, challenges, directions
H Kilicoglu
Briefings in bioinformatics 19 (6), 1400-1414, 2018
542018
Broad-coverage biomedical relation extraction with SemRep
H Kilicoglu, G Rosemblat, M Fiszman, D Shin
BMC bioinformatics 21, 1-28, 2020
512020
Summarizing drug information in Medline citations
M Fiszman, TC Rindflesch, H Kilicoglu
AMIA Annual Symposium Proceedings 2006, 254, 2006
462006
Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference
G Chen, MJ Cairelli, H Kilicoglu, D Shin, TC Rindflesch
PLoS computational biology 10 (6), e1003666, 2014
412014
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Articles 1–20