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Anshul Kundaje
Anshul Kundaje
Associate Professor, Dept. of Genetics, Dept. of Computer Science, Stanford University
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
EP Consortium
Nature 489 (7414), 57–74, 2012
174972012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
64412015
Learning important features through propagating activation differences
A Shrikumar, P Greenside, A Kundaje
International conference on machine learning, 3145-3153, 2017
5610*2017
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
23482012
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the royal society interface 15 (141), 20170387, 2018
22952018
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
MR Corces, AE Trevino, EG Hamilton, PG Greenside, ...
Nature methods 14 (10), 959-962, 2017
21152017
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
20262014
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
17312012
Wilds: A benchmark of in-the-wild distribution shifts
PW Koh, S Sagawa, H Marklund, SM Xie, M Zhang, A Balsubramani, ...
International conference on machine learning, 5637-5664, 2021
15362021
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
15352020
The ENCODE blacklist: identification of problematic regions of the genome
HM Amemiya, A Kundaje, AP Boyle
Scientific reports 9 (1), 9354, 2019
14852019
Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
MR Corces, JD Buenrostro, B Wu, PG Greenside, SM Chan, JL Koenig, ...
Nature genetics 48 (10), 1193-1203, 2016
11672016
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
10812012
Linking disease associations with regulatory information in the human genome
MA Schaub, AP Boyle, A Kundaje, S Batzoglou, M Snyder
Genome research 22 (9), 1748-1759, 2012
9152012
Defining functional DNA elements in the human genome
M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ...
Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014
9022014
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
8782011
Opportunities and challenges for transcriptome-wide association studies
M Wainberg, N Sinnott-Armstrong, N Mancuso, AN Barbeira, DA Knowles, ...
Nature genetics 51 (4), 592-599, 2019
8192019
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers
S Onengut-Gumuscu, WM Chen, O Burren, NJ Cooper, AR Quinlan, ...
Nature genetics 47 (4), 381-386, 2015
7322015
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6882011
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
6262013
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