Desiree Tillo
Desiree Tillo
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The DNA-encoded nucleosome organization of a eukaryotic genome
N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ...
Nature 458 (7236), 362-366, 2009
A high-resolution atlas of nucleosome occupancy in yeast
W Lee, D Tillo, N Bray, RH Morse, RW Davis, TR Hughes, C Nislow
Nature genetics 39 (10), 1235-1244, 2007
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters
G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ...
Molecular cell 32 (6), 878-887, 2008
G+ C content dominates intrinsic nucleosome occupancy
D Tillo, TR Hughes
BMC bioinformatics 10, 1-13, 2009
High nucleosome occupancy is encoded at human regulatory sequences
D Tillo, N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, Y Field, ...
PloS one 5 (2), e9129, 2010
Nucleosome sequence preferences influence in vivo nucleosome organization
N Kaplan, I Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ...
Nature structural & molecular biology 17 (8), 918-920, 2010
Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein
E Zalckvar, C Paulus, D Tillo, A Asbach-Nitzsche, Y Lubling, C Winterling, ...
Proceedings of the National Academy of Sciences 110 (32), 13126-13131, 2013
Custom DNA microarrays reveal diverse binding preferences of proteins and small molecules to thousands of G-quadruplexes
S Ray, D Tillo, RE Boer, N Assad, M Barshai, G Wu, Y Orenstein, D Yang, ...
ACS chemical biology 15 (4), 925-935, 2020
CTCF is a barrier for 2C-like reprogramming
T Olbrich, M Vega-Sendino, D Tillo, W Wu, N Zolnerowich, R Pavani, ...
Nature Communications 12 (1), 4856, 2021
Codep: maximizing co‐evolutionary interdependencies to discover interacting proteins
ERM Tillier, L Biro, G Li, D Tillo
Proteins: Structure, Function, and Bioinformatics 63 (4), 822-831, 2006
ASXL1 and STAG2 are common mutations in GATA2 deficiency patients with bone marrow disease and myelodysplastic syndrome
RR West, KR Calvo, LJ Embree, W Wang, LM Tuschong, TR Bauer Jr, ...
Blood advances 6 (3), 793-807, 2022
Spatial meta-transcriptomics reveal associations of intratumor bacteria burden with lung cancer cells showing a distinct oncogenic signature
A Wong-Rolle, Q Dong, Y Zhu, P Divakar, JL Hor, N Kedei, M Wong, ...
Journal for Immunotherapy of Cancer 10 (7), 2022
Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution
X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ...
Genome biology and evolution 7 (11), 3155-3169, 2015
5-Methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) enhance the DNA binding of CREB1 to the C/EBP half-site tetranucleotide GCAA
KS Syed, X He, D Tillo, J Wang, SR Durell, C Vinson
Biochemistry 55 (49), 6940-6948, 2016
The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine
D Tillo, S Ray, KS Syed, MR Gaylor, X He, J Wang, N Assad, SR Durell, ...
Biochemistry 56 (47), 6200-6210, 2017
Custom G4 microarrays reveal selective G-quadruplex recognition of small molecule BMVC: a large-scale assessment of ligand binding selectivity
G Wu, D Tillo, S Ray, TC Chang, JS Schneekloth Jr, C Vinson, D Yang
Molecules 25 (15), 3465, 2020
Inheritance of cytosine methylation
D Tillo, S Mukherjee, C Vinson
Journal of Cellular Physiology 231 (11), 2346-2352, 2016
A knock-in mouse model of thymoma with the Gtf2i L424h mutation
Y He, IK Kim, J Bian, A Polyzos, DC Di Giammartino, YW Zhang, J Luo, ...
Journal of Thoracic Oncology 17 (12), 1375-1386, 2022
The ETS transcription factor ERF controls the exit from the naïve pluripotent state in a MAPK-dependent manner
M Vega-Sendino, T Olbrich, D Tillo, AD Tran, CN Domingo, M Franco, ...
Science Advances 7 (40), eabg8306, 2021
Bacterial lipocalins: origin, structure, and function
RE Bishop, C Cambillau, GG Privé, D Hsi, D Tillo, ERM Tillier
Madame Curie Bioscience Database [Internet], 2013
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