| Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ... autophagy 17 (1), 1-382, 2021 | 13609* | 2021 |
| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4140 | 2005 |
| Inferring genetic networks and identifying compound mode of action via expression profiling TS Gardner, D Di Bernardo, D Lorenz, JJ Collins Science 301 (5629), 102-105, 2003 | 1482 | 2003 |
| How to infer gene networks from expression profiles M Bansal, V Belcastro, A Ambesi‐Impiombato, D Di Bernardo Molecular systems biology 3 (1), 78, 2007 | 1072 | 2007 |
| Discovery of drug mode of action and drug repositioning from transcriptional responses F Iorio, R Bosotti, E Scacheri, V Belcastro, P Mithbaokar, R Ferriero, ... Proceedings of the National Academy of Sciences 107 (33), 14621-14626, 2010 | 902 | 2010 |
| Inference of gene regulatory networks and compound mode of action from time course gene expression profiles M Bansal, GD Gatta, D Di Bernardo Bioinformatics 22 (7), 815-822, 2006 | 526 | 2006 |
| Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks D di Bernardo, MJ Thompson, TS Gardner, SE Chobot, EL Eastwood, ... Nature biotechnology 23 (3), 377-383, 2005 | 499 | 2005 |
| A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches I Cantone, L Marucci, F Iorio, MA Ricci, V Belcastro, M Bansal, S Santini, ... Cell 137 (1), 172-181, 2009 | 440 | 2009 |
| Autophagosome–lysosome fusion triggers a lysosomal response mediated by TLR9 and controlled by OCRL MG De Leo, L Staiano, M Vicinanza, A Luciani, A Carissimo, M Mutarelli, ... Nature cell biology 18 (8), 839-850, 2016 | 171 | 2016 |
| MiRNAs confer phenotypic robustness to gene networks by suppressing biological noise V Siciliano, I Garzilli, C Fracassi, S Criscuolo, S Ventre, D Di Bernardo Nature communications 4 (1), 2364, 2013 | 171 | 2013 |
| Id proteins synchronize stemness and anchorage to the niche of neural stem cells F Niola, X Zhao, D Singh, A Castano, R Sullivan, M Lauria, H Nam, ... Nature cell biology 14 (5), 477-487, 2012 | 156 | 2012 |
| In-Vivo Real-Time Control of Protein Expression from Endogenous and Synthetic Gene Networks F Menolascina, G Fiore, E Orabona, L De Stefano, M Ferry, J Hasty, ... PLoS computational biology 10 (5), e1003625, 2014 | 138 | 2014 |
| Identifying network of drug mode of action by gene expression profiling F Iorio, R Tagliaferri, D Bernardo Journal of Computational Biology 16 (2), 241-251, 2009 | 127 | 2009 |
| Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function V Belcastro, V Siciliano, F Gregoretti, P Mithbaokar, G Dharmalingam, ... Nucleic acids research 39 (20), 8677-8688, 2011 | 125 | 2011 |
| High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs M Karali, M Persico, M Mutarelli, A Carissimo, M Pizzo, V Singh Marwah, ... Nucleic acids research 44 (4), 1525-1540, 2016 | 122 | 2016 |
| Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering G Della Gatta, M Bansal, A Ambesi-Impiombato, D Antonini, C Missero, ... Genome research 18 (6), 939-948, 2008 | 107 | 2008 |
| Robust identification of large genetic networks D Di Bernardo, TS Gardner, JJ Collins Biocomputing 2004, 486-497, 2003 | 102 | 2003 |
| A single-cell analysis of breast cancer cell lines to study tumour heterogeneity and drug response G Gambardella, G Viscido, B Tumaini, A Isacchi, R Bosotti, D Di Bernardo Nature communications 13 (1), 1714, 2022 | 101 | 2022 |
| Impaired mitophagy links mitochondrial disease to epithelial stress in methylmalonyl-CoA mutase deficiency A Luciani, A Schumann, M Berquez, Z Chen, D Nieri, M Failli, H Debaix, ... Nature communications 11 (1), 970, 2020 | 97 | 2020 |
| Goblet cell hyperplasia requires high bicarbonate transport to support mucin release G Gorrieri, P Scudieri, E Caci, M Schiavon, V Tomati, F Sirci, F Napolitano, ... Scientific reports 6 (1), 36016, 2016 | 97 | 2016 |
Mukesh BansalBristol Myers SquibbVerified email at bms.com
