Dinler A Antunes
Dinler A Antunes
Assistant Professor of Computational Biology at the University of Houston
Verified email at - Homepage
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Understanding the challenges of protein flexibility in drug design
DA Antunes, D Devaurs, LE Kavraki
Expert opinion on drug discovery 10 (12), 1301-1313, 2015
DINC 2.0: a new protein–peptide docking webserver using an incremental approach
DA Antunes, M Moll, D Devaurs, KR Jackson, G Lizée, LE Kavraki
Cancer research 77 (21), e55-e57, 2017
Current progress and open challenges for applying deep learning across the biosciences
N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ...
Nature Communications 13 (1), 1728, 2022
Interpreting T-cell cross-reactivity through structure: implications for TCR-based cancer immunotherapy
DA Antunes, MM Rigo, MV Freitas, MFA Mendes, M Sinigaglia, G Lizée, ...
Frontiers in immunology 8, 1210, 2017
Neutralizing antibodies to bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) and its subtypes
APM Varela, CL Holz, SP Cibulski, TF Teixeira, DA Antunes, AC Franco, ...
Veterinary microbiology 142 (3-4), 254-260, 2010
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
DA Antunes, JR Abella, D Devaurs, MM Rigo, LE Kavraki
Current topics in medicinal chemistry 18 (26), 2239-2255, 2018
General prediction of peptide-MHC binding modes using incremental docking: a proof of concept
DA Antunes, D Devaurs, M Moll, G Lizée, LE Kavraki
Scientific reports 8 (1), 4327, 2018
DockTope: a Web-based tool for automated pMHC-I modelling
M Menegatti Rigo, D Amaral Antunes, M Vaz de Freitas, ...
Scientific reports 5 (1), 18413, 2015
Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC: peptide complexes to cross-reactivity assessment
DA Antunes, GF Vieira, MM Rigo, SP Cibulski, M Sinigaglia, JAB Chies
PloS one 5 (4), e10353, 2010
Frequency, Private Specificity, and Cross-Reactivity of Preexisting Hepatitis C Virus (HCV)-Specific CD8+ T Cells in HCV-Seronegative Individuals: Implications for …
S Zhang, RK Bakshi, PV Suneetha, P Fytili, DA Antunes, GF Vieira, ...
Journal of Virology 89 (16), 8304-8317, 2015
Structural in silico analysis of cross-genotype-reactivity among naturally occurring HCV NS3-1073-variants in the context of HLA-A* 02: 01 allele
DA Antunes, MM Rigo, JP Silva, SP Cibulski, M Sinigaglia, JAB Chies, ...
Molecular immunology 48 (12-13), 1461-1467, 2011
APE-gen: A fast method for generating ensembles of bound peptide-MHC conformations
JR Abella, DA Antunes, C Clementi, LE Kavraki
Molecules 24 (5), 881, 2019
New Insights into the In Silico Prediction of HIV Protease Resistance to Nelfinavir
DA Antunes, MM Rigo, M Sinigaglia, RM de Medeiros, DM Junqueira, ...
PLoS One 9 (1), e87520, 2014
CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes
M Sinigaglia, DA Antunes, MM Rigo, JAB Chies, GF Vieira
Database 2013, 2013
Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins
D Devaurs, DA Antunes, S Hall-Swan, N Mitchell, M Moll, G Lizée, ...
BMC molecular and cell biology 20 (1), 1-15, 2019
Improved structural method for T-cell cross-reactivity prediction
MFA Mendes, DA Antunes, MM Rigo, M Sinigaglia, GF Vieira
Molecular Immunology 67 (2), 303-310, 2015
Coarse-grained conformational sampling of protein structure improves the fit to experimental hydrogen-exchange data
D Devaurs, DA Antunes, M Papanastasiou, M Moll, D Ricklin, JD Lambris, ...
Frontiers in molecular biosciences 4, 13, 2017
HLA-arena: A customizable environment for the structural modeling and analysis of peptide-HLA complexes for cancer immunotherapy
DA Antunes, JR Abella, S Hall-Swan, D Devaurs, A Conev, M Moll, ...
JCO Clinical Cancer Informatics 4, 623-636, 2020
Efficacy of an inactivated, recombinant bovine herpesvirus type 5 (BoHV-5) vaccine
FS Campos, D Dezen, DA Antunes, HF Santos, TS Arantes, A Cenci, ...
Veterinary microbiology 148 (1), 18-26, 2011
Markov state modeling reveals alternative unbinding pathways for peptide–MHC complexes
JR Abella, D Antunes, K Jackson, G Lizée, C Clementi, LE Kavraki
Proceedings of the National Academy of Sciences 117 (48), 30610-30618, 2020
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