| KEGG for linking genomes to life and the environment M Kanehisa, M Araki, S Goto, M Hattori, M Hirakawa, M Itoh, T Katayama, ... Nucleic acids research 36 (suppl_1), D480-D484, 2007 | 6604 | 2007 |
| From genomics to chemical genomics: new developments in KEGG M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, ... Nucleic acids research 34 (suppl_1), D354-D357, 2006 | 3672 | 2006 |
| Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems K Nishida, T Arazoe, N Yachie, S Banno, M Kakimoto, M Tabata, ... Science 353 (6305), aaf8729, 2016 | 1493 | 2016 |
| Prediction of drug–target interaction networks from the integration of chemical and genomic spaces Y Yamanishi, M Araki, A Gutteridge, W Honda, M Kanehisa Bioinformatics 24 (13), i232-i240, 2008 | 1169 | 2008 |
| Programmable cells: interfacing natural and engineered gene networks H Kobayashi, M Kaern, M Araki, K Chung, TS Gardner, CR Cantor, ... Proceedings of the National Academy of Sciences 101 (22), 8414-8419, 2004 | 794 | 2004 |
| Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes Y Minowa, M Araki, M Kanehisa Journal of molecular biology 368 (5), 1500-1517, 2007 | 203 | 2007 |
| Circadian regulation of intracellular G-protein signalling mediates intercellular synchrony and rhythmicity in the suprachiasmatic nucleus M Doi, A Ishida, A Miyake, M Sato, R Komatsu, F Yamazaki, I Kimura, ... Nature communications 2 (1), 327, 2011 | 162 | 2011 |
| Allosteric regulation of a ribozyme activity through ligand-induced conformational change M Araki, Y Okuno, Y Hara, Y Sugiura Nucleic acids research 26 (14), 3379-3384, 1998 | 156 | 1998 |
| Development of bio-based fine chemical production through synthetic bioengineering KY Hara, M Araki, N Okai, S Wakai, T Hasunuma, A Kondo Microbial cell factories 13, 1-19, 2014 | 63 | 2014 |
| GEM-TREND: a web tool for gene expression data mining toward relevant network discovery C Feng, M Araki, R Kunimoto, A Tamon, H Makiguchi, S Niijima, ... BMC genomics 10, 1-11, 2009 | 44 | 2009 |
| Transporter engineering in biomass utilization by yeast KY Hara, J Kobayashi, R Yamada, D Sasaki, Y Kuriya, Y Hirono-Hara, ... FEMS Yeast Research 17 (7), fox061, 2017 | 43 | 2017 |
| A systematic approach to time-series metabolite profiling and RNA-seq analysis of Chinese hamster ovary cell culture HH Hsu, M Araki, M Mochizuki, Y Hori, M Murata, P Kahar, T Yoshida, ... Scientific reports 7 (1), 43518, 2017 | 38 | 2017 |
| Mechanism-based tuning of insect 3, 4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids CJ Vavricka, T Yoshida, Y Kuriya, S Takahashi, T Ogawa, F Ono, K Agari, ... Nature communications 10 (1), 2015, 2019 | 35 | 2019 |
| Development of a multi-gene expression system in Xanthophyllomyces dendrorhous KY Hara, T Morita, M Mochizuki, K Yamamoto, C Ogino, M Araki, A Kondo Microbial Cell Factories 13, 1-8, 2014 | 35 | 2014 |
| Synthetic inhibitors of the processing of pretransfer RNA by the ribonuclease P ribozyme: enzyme inhibitors which act by binding to substrate Y Hori, EV Bichenkova, AN Wilton, MN El-Attug, S Sadat-Ebrahimi, ... Biochemistry 40 (3), 603-608, 2001 | 34 | 2001 |
| M-path: a compass for navigating potential metabolic pathways M Araki, RS Cox III, H Makiguchi, T Ogawa, T Taniguchi, K Miyaoku, ... Bioinformatics 31 (6), 905-911, 2015 | 33 | 2015 |
| Reconstruction of metabolic pathway for isobutanol production in Escherichia coli S Noda, Y Mori, S Oyama, A Kondo, M Araki, T Shirai Microbial cell factories 18, 1-10, 2019 | 32 | 2019 |
| Evaluation and screening of efficient promoters to improve astaxanthin production in Xanthophyllomyces dendrorhous KY Hara, T Morita, Y Endo, M Mochizuki, M Araki, A Kondo Applied microbiology and biotechnology 98, 6787-6793, 2014 | 24 | 2014 |
| Exploration and evaluation of machine learning-based models for predicting enzymatic reactions N Watanabe, M Murata, T Ogawa, CJ Vavricka, A Kondo, C Ogino, ... Journal of Chemical Information and Modeling 60 (3), 1833-1843, 2020 | 22 | 2020 |
| Machine learning discovery of missing links that mediate alternative branches to plant alkaloids CJ Vavricka, S Takahashi, N Watanabe, M Takenaka, M Matsuda, ... Nature communications 13 (1), 1405, 2022 | 17 | 2022 |
