| An adaptive mutation in adenylate kinase that increases organismal fitness is linked to stability–activity trade-offs R Counago, CJ Wilson, MI Pena, P Wittung-Stafshede, Y Shamoo Protein Engineering, Design & Selection 21 (1), 19-27, 2008 | 48 | 2008 |
| Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection MI Pena, M Davlieva, MR Bennett, JS Olson, Y Shamoo Molecular systems biology 6 (1), 387, 2010 | 47 | 2010 |
| Pheromone-induced morphogenesis and gradient tracking are dependent on the MAPK Fus3 binding to Gα B Errede, L Vered, E Ford, MI Pena, TC Elston Molecular Biology of the Cell 26 (18), 3343-3358, 2015 | 32 | 2015 |
| A review of parameters and heuristics for guiding metabolic pathfinding SM Kim, MI Pena, M Moll, GN Bennett, LE Kavraki Journal of cheminformatics 9, 1-13, 2017 | 29 | 2017 |
| Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability F Qi, C Thakker, F Zhu, M Pena, KY San, GN Bennett Journal of Industrial Microbiology and Biotechnology 45 (11), 993-1002, 2018 | 26 | 2018 |
| Modulation of receptor dynamics by the regulator of G protein signaling Sst2 SP Venkatapurapu, JB Kelley, G Dixit, M Pena, B Errede, HG Dohlman, ... Molecular biology of the cell 26 (22), 4124-4134, 2015 | 20 | 2015 |
| Machine learning guided atom mapping of metabolic reactions EE Litsa, MI Pena, M Moll, G Giannakopoulos, GN Bennett, LE Kavraki Journal of Chemical Information and Modeling 59 (3), 1121-1135, 2018 | 17 | 2018 |
| Metabolic engineering of Escherichia coli for quinolinic acid production by assembling L-aspartate oxidase and quinolinate synthase as an enzyme complex F Zhu, M Peña, GN Bennett Metabolic engineering 67, 164-172, 2021 | 15 | 2021 |
| An evaluation of different clustering methods and distance measures used for grouping metabolic pathways SM Kim, MI Pena, M Moll, G Giannakopoulos, GN Bennett, LE Kavraki, ... 2016 international conference on bioinformatics and computational biology …, 2016 | 10 | 2016 |
| Improving the organization and interactivity of metabolic pathfinding with precomputed pathways SM Kim, MI Peña, M Moll, GN Bennett, LE Kavraki BMC bioinformatics 21, 1-22, 2020 | 6 | 2020 |
| Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness MI Peña, E Van Itallie, MR Bennett, Y Shamoo Chaos: An Interdisciplinary Journal of Nonlinear Science 20 (2), 2010 | 6 | 2010 |
| A predictive model of gene expression reveals the role of network motifs in the mating response of yeast AE Pomeroy, MI Pena, JR Houser, G Dixit, HG Dohlman, TC Elston, ... Science signaling 14 (670), eabb5235, 2021 | 1 | 2021 |
| Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability. QF Qi Feng, C Thakker, ZFY Zhu FaYin, M Pena, SKY San KaYiu, ... | | 2018 |
| Periodic Probing of the Yeast Mating Pathway J Houser, M Pena, G Dixit, B Errede, T Elston MOLECULAR BIOLOGY OF THE CELL 24, 2013 | | 2013 |
| Exploring mutational pathways in the context of the C-terminal helix of Bacillus subtilis adenylate kinase K White, A Benitez, M Peña, Y Shamoo | | 2008 |
| Material geometries for laceless closures M Peña, A Ta | | |
Yousif ShamooBioSciences, Rice UniversityVerified email at rice.edu
