TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ... Nucleic acids research 44 (8), e71-e71, 2016 | 3149 | 2016 |
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ... Cell 164 (3), 550-563, 2016 | 2108 | 2016 |
Transforming fusions of FGFR and TACC genes in human glioblastoma D Singh, JM Chan, P Zoppoli, F Niola, R Sullivan, A Castano, EM Liu, ... Science 337 (6099), 1231-1235, 2012 | 835 | 2012 |
RNA-Seq signatures normalized by mRNA abundance allow absolute deconvolution of human immune cell types G Monaco, B Lee, W Xu, S Mustafah, YY Hwang, C Carré, N Burdin, ... Cell reports 26 (6), 1627-1640. e7, 2019 | 751 | 2019 |
Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer Cell, 2021 | 477 | 2021 |
Evolution of metastases in space and time under immune selection M Angelova, B Mlecnik, A Vasaturo, G Bindea, T Fredriksen, L Lafontaine, ... Cell 175 (3), 751-765. e16, 2018 | 399 | 2018 |
TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach P Zoppoli, S Morganella, M Ceccarelli BMC bioinformatics 11, 1-15, 2010 | 300 | 2010 |
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ... F1000Research 5, 2016 | 263 | 2016 |
Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities L Garofano, S Migliozzi, YT Oh, F D’Angelo, RD Najac, A Ko, B Frangaj, ... Nature Cancer, 1-16, 2021 | 262 | 2021 |
Single-cell transcriptome analysis of lineage diversity in high-grade glioma J Yuan, HM Levitin, V Frattini, EC Bush, DM Boyett, J Samanamud, ... Genome medicine 10, 1-15, 2018 | 216 | 2018 |
The molecular landscape of glioma in patients with Neurofibromatosis 1 F D’Angelo, M Ceccarelli, Tala, L Garofano, J Zhang, V Frattini, FP Caruso, ... Nature medicine 25 (1), 176-187, 2019 | 183 | 2019 |
A metabolic function of FGFR3-TACC3 gene fusions in cancer V Frattini, SM Pagnotta, Tala, JJ Fan, MV Russo, SB Lee, L Garofano, ... Nature 553 (7687), 222-227, 2018 | 181 | 2018 |
Treatment of metabolic acidosis with sodium bicarbonate delays progression of chronic kidney disease: the UBI Study BR Di Iorio, A Bellasi, KL Raphael, D Santoro, F Aucella, L Garofano, ... Journal of nephrology 32, 989-1001, 2019 | 180 | 2019 |
Multivariate indicator Kriging approach using a GIS to classify soil degradation for Mediterranean agricultural lands N Diodato, M Ceccarelli Ecological Indicators 4 (3), 177-187, 2004 | 176 | 2004 |
Upregulation of miR-21 by Ras in vivo and its role in tumor growth D Frezzetti, M De Menna, P Zoppoli, C Guerra, A Ferraro, AM Bello, ... Oncogene 30 (3), 275-286, 2011 | 170 | 2011 |
Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis W Hendrickx, I Simeone, S Anjum, Y Mokrab, F Bertucci, P Finetti, ... Oncoimmunology 6 (2), e1253654, 2017 | 154 | 2017 |
Signaling networks associated with AKT activation in non-small cell lung cancer (NSCLC): new insights on the role of phosphatydil-inositol-3 kinase M Scrima, C De Marco, F Fabiani, R Franco, G Pirozzi, G Rocco, M Ravo, ... PloS one 7 (2), e30427, 2012 | 150 | 2012 |
Learning gene regulatory networks from only positive and unlabeled data L Cerulo, C Elkan, M Ceccarelli BMC bioinformatics 11, 1-16, 2010 | 136 | 2010 |
Germline genetic contribution to the immune landscape of cancer RW Sayaman, M Saad, V Thorsson, D Hu, W Hendrickx, J Roelands, ... Immunity 54 (2), 367-386. e8, 2021 | 135 | 2021 |
Interpolation processes using multivariate geostatistics for mapping of climatological precipitation mean in the Sannio Mountains (southern Italy) N Diodato, M Ceccarelli Earth Surface Processes and Landforms: The Journal of the British …, 2005 | 132 | 2005 |