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Dr. David J. Clarke
Dr. David J. Clarke
Senior Lecturer, School of Chemistry. University of Edinburgh
Verified email at ed.ac.uk - Homepage
Title
Cited by
Cited by
Year
Dying and necrotic neutrophils are anti-inflammatory secondary to the release of α-defensins
K Miles, DJ Clarke, W Lu, Z Sibinska, PE Beaumont, DJ Davidson, ...
The Journal of Immunology 183 (3), 2122-2132, 2009
1922009
Garlic revisited: antimicrobial activity of allicin-containing garlic extracts against Burkholderia cepacia complex
D Wallock-Richards, CJ Doherty, L Doherty, DJ Clarke, M Place, ...
PLoS One 9 (12), e112726, 2014
1482014
The chemical basis of serine palmitoyltransferase inhibition by myriocin
JM Wadsworth, DJ Clarke, SA McMahon, JP Lowther, AE Beattie, ...
Journal of the American Chemical Society 135 (38), 14276-14285, 2013
1352013
Structure-activity relationships in defensin dimers: a novel link between β-defensin tertiary structure and antimicrobial activity
DJ Campopiano, DJ Clarke, NC Polfer, PE Barran, RJ Langley, ...
Journal of Biological Chemistry 279 (47), 48671-48679, 2004
1212004
Analysis and separation of residues important for the chemoattractant and antimicrobial activities of β-defensin 3
K Taylor, DJ Clarke, B McCullough, W Chin, E Seo, D Yang, J Oppenheim, ...
Journal of Biological Chemistry 283 (11), 6631-6639, 2008
1202008
Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments.
D He, S Hughes, S Vanden-Hehir, A Georgiev, K Altenbach, E Tarrant, ...
eLife 5, e18972, 2016
872016
Chemical diversity and complexity of scotch whisky as revealed by high-resolution mass spectrometry
W Kew, I Goodall, D Clarke, D Uhrín
Journal of The American Society for Mass Spectrometry 28 (1), 200-213, 2016
832016
Interlaboratory study for characterizing monoclonal antibodies by top-down and middle-down mass spectrometry
K Srzentic, L Fornelli, YO Tsybin, JA Loo, H Seckler, JN Agar, ...
Journal of the American Society for Mass Spectrometry 31 (9), 1783-1802, 2020
822020
Is it biologically relevant to measure the structures of small peptides in the gas-phase?
PE Barran, NC Polfer, DJ Campopiano, DJ Clarke, PRR Langridge-Smith, ...
International Journal of Mass Spectrometry 240 (3), 273-284, 2005
792005
S-nitrosylation of the zinc finger protein SRG1 regulates plant immunity
B Cui, Q Pan, D Clarke, MO Villarreal, S Umbreen, B Yuan, W Shan, ...
Nature Communications 9 (1), 4226, 2018
762018
Pathological structural conversion of α-synuclein at the mitochondria induces neuronal toxicity
ML Choi, A Chappard, BP Singh, C Maclachlan, M Rodrigues, ...
Nature neuroscience 25 (9), 1134-1148, 2022
732022
Interactive van Krevelen diagrams – Advanced visualisation of mass spectrometry data of complex mixtures.
W Kew, J Blackburn, D Clarke, D Uhrin
Rapid Comms. Mass. Spec. 31 (7), 658–662, 2017
672017
Maturation of McjA precursor peptide into active microcin MccJ25
DJ Clarke, DJ Campopiano
Organic & biomolecular chemistry 5 (16), 2564-2566, 2007
622007
Molecular basis of Streptococcus mutans sortase A inhibition by the flavonoid natural product trans-chalcone
DJ Wallock-Richards, J Marles-Wright, DJ Clarke, A Maitra, M Dodds, ...
Chemical communications 51 (52), 10483-10485, 2015
612015
Cellular redox potential and the biomolecular electrochemical series: a systems hypothesis
V Mallikarjun, DJ Clarke, CJ Campbell
Free Radical Biology and Medicine 53 (2), 280-288, 2012
592012
Inhibition of the PLP-dependent enzyme serine palmitoyltransferase by cycloserine: evidence for a novel decarboxylative mechanism of inactivation
J Lowther, BA Yard, KA Johnson, LG Carter, VT Bhat, MCC Raman, ...
Molecular BioSystems 6 (9), 1682-1693, 2010
572010
Structural and functional studies of the biotin protein ligase from Aquifex aeolicus reveal a critical role for a conserved residue in target specificity
CM Tron, IW McNae, M Nutley, DJ Clarke, A Cooper, MD Walkinshaw, ...
Journal of molecular biology 387 (1), 129-146, 2009
542009
IL-1β–induced protection of keratinocytes against Staphylococcus aureus-Secreted Proteases Is Mediated by Human β-Defensin 2
B Wang, BJ McHugh, A Qureshi, DJ Campopiano, DJ Clarke, ...
Journal of Investigative Dermatology 137 (1), 95-105, 2017
512017
Desalting large protein complexes during native electrospray mass spectrometry by addition of amino acids to the working solution
DJ Clarke, DJ Campopiano
Analyst 140 (8), 2679-2686, 2015
512015
Identification of two reactive cysteine residues in the tumor suppressor protein p53 using top-down FTICR mass spectrometry
J Scotcher, DJ Clarke, SK Weidt, CL Mackay, TR Hupp, PJ Sadler, ...
Journal of the American Society for Mass Spectrometry 22 (5), 888-897, 2011
512011
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