Gregor Rot
Gregor Rot
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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909-915, 2010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ...
Nature neuroscience 14 (4), 452-458, 2011
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain
B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ...
Scientific reports 2 (1), 603, 2012
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ...
Genome research 21 (10), 1572-1582, 2011
iCLIP predicts the dual splicing effects of TIA-RNA interactions
Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ...
PLoS biology 8 (10), e1000530, 2010
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
JoVE (Journal of Visualized Experiments), e2638, 2011
Conserved developmental transcriptomes in evolutionarily divergent species
A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ...
Genome biology 11, 1-12, 2010
CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function
JL Wagnon, M Briese, W Sun, CL Mahaffey, T Curk, G Rot, J Ule, ...
PLoS genetics 8 (11), e1003067, 2012
High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43
G Rot, Z Wang, I Huppertz, M Modic, T Lenče, M Hallegger, N Haberman, ...
Cell Reports 19 (5), 1056-1067, 2017
Cross-regulation between TDP-43 and paraspeckles promotes pluripotency-differentiation transition
M Modic, M Grosch, G Rot, S Schirge, T Lepko, T Yamazaki, FCY Lee, ...
Molecular cell 74 (5), 951-965. e13, 2019
dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface
G Rot, A Parikh, T Curk, A Kuspa, G Shaulsky, B Zupan
BMC bioinformatics 10 (1), 1-8, 2009
RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing
M Cereda, U Pozzoli, G Rot, P Juvan, A Schweitzer, T Clark, J Ule
Genome biology 15, 1-12, 2014
Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions
W Nasser, B Santhanam, ER Miranda, A Parikh, K Juneja, G Rot, C Dinh, ...
Current Biology 23 (10), 862-872, 2013
SNPsyn: detection and exploration of SNP–SNP interactions
T Curk, G Rot, B Zupan
Nucleic acids research 39 (suppl_2), W444-W449, 2011
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann, W Danecka, ...
RNA, rna. 079849.123, 2023
The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians
T Spruce, M Plass, A Gohr, D Ray, M Martínez de Lagrán, G Rot, A Nóvoa, ...
PLoS biology 20 (4), e3001615, 2022
A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells
Y Bai, E Caussinus, S Leo, F Bosshardt, F Myachina, G Rot, MD Robinson, ...
BMC genomics 22 (1), 1-38, 2021
A nuclear role for ARGONAUTE-2 in regulation of neuronal alternative polyadenylation
R Ravid, A Siany, N Rivkin, C Eitan, H Marmor-Kollet, E Yanowski, ...
BioRxiv, 2020.12. 15.422806, 2020
Analysis of RNA polyadenylation in healthy and osteoarthritic human articular cartilage
P Winstanley-Zarach, G Rot, S Kuba, A Smagul, MJ Peffers, SR Tew
International Journal of Molecular Sciences 24 (7), 6611, 2023
The Arabidopsis U1 snRNP regulates mRNA 3'-end processing
AF Mangilet, J Weber, S Schueler, I Droste-Borel, S Streicher, ...
bioRxiv, 2023.09. 19.558503, 2023
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