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Ricardo Omar Ramirez Flores
Ricardo Omar Ramirez Flores
Verified email at uni-heidelberg.de
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Cited by
Year
Spatial multi-omic map of human myocardial infarction
C Kuppe, RO Ramirez Flores, Z Li, S Hayat, RT Levinson, X Liao, ...
Nature 608 (7924), 766-777, 2022
2082022
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
175*2022
decoupleR: ensemble of computational methods to infer biological activities from omics data
P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ...
Bioinformatics Advances 2 (1), vbac016, 2022
1272022
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez
Genome biology 23 (1), 97, 2022
80*2022
Gene regulatory network inference in the era of single-cell multi-omics
P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ...
Nature Reviews Genetics 24 (11), 739-754, 2023
622023
The spatial transcriptomic landscape of the healing mouse intestine following damage
SM Parigi, L Larsson, S Das, RO Ramirez Flores, A Frede, KP Tripathi, ...
Nature Communications 13 (1), 828, 2022
492022
Consensus transcriptional landscape of human end‐stage heart failure
RO Ramirez Flores, JD Lanzer, CH Holland, F Leuschner, P Most, ...
Journal of the American Heart Association 10 (7), e019667, 2021
412021
B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
A Frede, P Czarnewski, G Monasterio, KP Tripathi, DA Bejarano, ...
Immunity 55 (12), 2336-2351. e12, 2022
302022
Transcriptomic cross‐species analysis of chronic liver disease reveals consistent regulation between humans and mice
CH Holland, RO Ramirez Flores, M Myllys, R Hassan, K Edlund, ...
Hepatology Communications 6 (1), 161-177, 2022
292022
Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes
L Balzano-Nogueira, R Ramirez, T Zamkovaya, J Dailey, AN Ardissone, ...
Genome biology 22, 1-27, 2021
212021
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ...
Nucleic Acids Research 51 (20), 10934-10949, 2023
202023
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
ROR Flores, JD Lanzer, D Dimitrov, B Velten, J Saez-Rodriguez
Elife 12, e93161, 2023
82023
LIANA+: an all-in-one cell-cell communication framework
D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ...
BioRxiv, 2023.08. 19.553863, 2023
82023
Transcriptomic cross-species analysis of chronic liver disease reveals consistent regulation between humans and mice. Hepatol Commun 6 (1): 161–177
CH Holland, RO Ramirez Flores, M Myllys
61797
Spatial cell type mapping of multiple sclerosis lesions
C Lerma-Martin, P Badia-i-Mompel, RO Ramirez Flores, P Sekol, ...
bioRxiv, 2022.11. 03.514906, 2022
42022
Complementing cell taxonomies with a multicellular analysis of tissues
RO Ramirez Flores, PSL Schäfer, L Küchenhoff, J Saez-Rodriguez
Physiology, 2024
12024
Single-cell transcriptomics reveal distinctive patterns of fibroblast activation in murine heart failure with preserved ejection fraction
JD Lanzer, LM Wienecke, RO Ramirez-Flores, MM Zylla, N Hartmann, ...
bioRxiv, 2023.05. 09.539983, 2023
12023
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results
V Paton, A Gabor, RO Ramirez Flores, P Badia-i-Mompel, J Tanevski, ...
bioRxiv, 2023.09. 13.557538, 2023
2023
Multi-scale molecular descriptions of human heart failure using single cell, spatial, and bulk transcriptomics
RO Ramirez Flores
2023
Consensus Transcriptional Landscape of Human End‐Stage Heart Failure
RO Ramirez Flores, JD Lanzer, CH Holland, F Leuschner, P Most, ...
Journal of the American Heart Association 10 (7), e019667, 2021
2021
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Articles 1–20