| limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47-e47, 2015 | 30593 | 2015 |
| voom: Precision weights unlock linear model analysis tools for RNA-seq read counts CW Law, Y Chen, W Shi, GK Smyth Genome biology 15, 1-17, 2014 | 5840 | 2014 |
| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie F1000Research 5, 2016 | 780 | 2016 |
| Glimma: interactive graphics for gene expression analysis S Su, CW Law, C Ah-Cann, ML Asselin-Labat, ME Blewitt, ME Ritchie Bioinformatics 33 (13), 2050-2052, 2017 | 174 | 2017 |
| Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson Genome biology 17, 1-15, 2016 | 147 | 2016 |
| Statistical methods for detecting differentially methylated loci and regions MD Robinson, A Kahraman, CW Law, H Lindsay, M Nowicka, LM Weber, ... Frontiers in genetics 5, 324, 2014 | 138 | 2014 |
| Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ... Genome biology 22, 1-24, 2021 | 134 | 2021 |
| Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive NY Fu, AC Rios, B Pal, CW Law, P Jamieson, R Liu, F Vaillant, F Jackling, ... Nature cell biology 19 (3), 164-176, 2017 | 125 | 2017 |
| Toward a gold standard for benchmarking gene set enrichment analysis L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ... Briefings in bioinformatics 22 (1), 545-556, 2021 | 115 | 2021 |
| Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria AH Achtman, S Pilat, CW Law, DJ Lynn, L Janot, ML Mayer, S Ma, ... Science Translational Medicine 4 (135), 135ra64-135ra64, 2012 | 112 | 2012 |
| GK Smyth limma powers differential expression analyses for RNA-sequencing and microarray studies., 2015, 43, p. e47 ME Ritchie, B Phipson, D Wu, Y Hu, CW Law, W Shi DOI: https://doi. org/10.1093/nar/gkv007, 0 | 95 | |
| The hematopoietic oncoprotein FOXP1 promotes tumor cell survival in diffuse large B-cell lymphoma by repressing S1PR2 signaling M Flori, CA Schmid, ET Sumrall, A Tzankov, CW Law, MD Robinson, ... Blood, The Journal of the American Society of Hematology 127 (11), 1438-1448, 2016 | 70 | 2016 |
| Easy and efficient ensemble gene set testing with EGSEA M Alhamdoosh, CW Law, L Tian, JM Sheridan, M Ng, ME Ritchie F1000Research 6, 2017 | 64 | 2017 |
| A guide to creating design matrices for gene expression experiments CW Law, K Zeglinski, X Dong, M Alhamdoosh, GK Smyth, ME Ritchie F1000Research 9, 2020 | 49 | 2020 |
| Covering all your bases: incorporating intron signal from RNA-seq data S Lee, AY Zhang, S Su, AP Ng, AZ Holik, ML Asselin-Labat, ME Ritchie, ... NAR Genomics and Bioinformatics 2 (3), lqaa073, 2020 | 40* | 2020 |
| The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools X Dong, L Tian, Q Gouil, H Kariyawasam, S Su, R De Paoli-Iseppi, ... NAR genomics and bioinformatics 3 (2), lqab028, 2021 | 39 | 2021 |
| RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods AZ Holik, CW Law, R Liu, Z Wang, W Wang, J Ahn, ML Asselin-Labat, ... Nucleic acids research 45 (5), e30-e30, 2017 | 35 | 2017 |
| Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ... Nature Methods 20 (11), 1810-1821, 2023 | 34 | 2023 |
| DNMT3L is a regulator of X chromosome compaction and post-meiotic gene transcription NM Zamudio, HS Scott, K Wolski, CY Lo, C Law, D Leong, SA Kinkel, ... PloS one 6 (3), e18276, 2011 | 30 | 2011 |
| The impact of influenza pulmonary infection and inflammation on vagal bronchopulmonary sensory neurons NAJ Verzele, BY Chua, CW Law, A Zhang, ME Ritchie, O Wightman, ... The FASEB Journal 35 (3), e21320, 2021 | 21 | 2021 |
