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Helena L. Crowell
Helena L. Crowell
Postdoc - CNAG, Barcelona, Spain
Verified email at cnag.eu - Homepage
Title
Cited by
Cited by
Year
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
M Nowicka, C Krieg, HL Crowell, LM Weber, FJ Hartmann, S Guglietta, ...
F1000Research 6, 2017
4202017
Compensation of signal spillover in suspension and imaging mass cytometry
HL Crowell, S Chevrier, VRT Zanotelli, S Engler, MD Robinson, ...
Cell systems 6 (5), 612-620. e5, 2018
288*2018
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
HL Crowell, C Soneson, PL Germain, D Calini, L Collin, C Raposo, ...
Nature communications 11 (1), 6077, 2020
223*2020
CATALYST: Cytometry dATa anALYSis Tools
HL Crowell, VRT Zanotelli, S Chevrier, MD Robinson, B Bodenmiller
R package, Bioconductor, 2017
61*2017
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor
HL Crowell, D Righelli, LM Weber, B Pardo, L Collado-Torres, ...
Bioinformatics 38 (11), 3128-3131, 2022
602022
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data
HL Crowell, S Chevrier, A Jacobs, S Sivapatham, B Bodenmiller, ...
F1000Research 9, 2020
362020
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data
A Lütge, J Zyprych-Walczak, UB Kunzmann, HL Crowell, D Calini, ...
Life science alliance 4 (6), 2021
282021
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease
A Garrido-Trigo, AM Corraliza, M Veny, I Dotti, E Melón-Ardanaz, A Rill, ...
Nature Communications 14 (1), 4506, 2023
24*2023
Feedback mechanisms control coexistence in a stem cell model of acute myeloid leukaemia
HL Crowell, AL MacLean, MPH Stumpf
Journal of Theoretical Biology 401, 43-53, 2016
232016
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma
KD Prummel, HL Crowell, S Nieuwenhuize, EC Brombacher, S Daetwyler, ...
Nature communications 13 (1), 1677, 2022
192022
The shaky foundations of simulating single-cell RNA sequencing data
HL Crowell, SX Morillo Leonardo, C Soneson, MD Robinson
Genome Biology 24 (1), 1-19, 2023
17*2023
Predicting neurological recovery after traumatic spinal cord injury by time-resolved analysis of monocyte subsets
RA Heller, J Seelig, HL Crowell, M Pilz, P Haubruck, Q Sun, L Schomburg, ...
Brain 144 (10), 3159-3174, 2021
122021
Selenium-binding protein 1 (SELENBP1) as biomarker for adverse clinical outcome after traumatic spinal cord injury
J Seelig, RA Heller, P Haubruck, Q Sun, GJ Klingenberg, J Hackler, ...
Frontiers in Neuroscience 15, 680240, 2021
82021
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
A Sonrel, A Luetge, C Soneson, I Mallona, PL Germain, S Knyazev, J Gilis, ...
Genome Biology 24 (1), 119, 2023
62023
distinct: A novel approach to differential distribution analyses
S Tiberi, HL Crowell, P Samartsidis, LM Weber, MD Robinson
The Annals of Applied Statistics 17 (2), 1681-1700, 2023
42023
The tidyomics ecosystem: Enhancing omic data analyses
WJ Hutchison, TJ Keyes, T Consortium, HL Crowell, C Soneson, V Yuan, ...
bioRxiv, 2023.09. 10.557072, 2023
12023
Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease (vol 14, 4506, 2023)
A Garrido-Trigo, AM Corraliza, M Veny, I Dotti, E Melon-Ardanaz, A Rill, ...
NATURE COMMUNICATIONS 15 (1), 2024
2024
Computational methods development and benchmarking for single-cell and spatial resolved omics data
HL Crowell
University of Zurich, 2023
2023
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Articles 1–18