Mutual repression enhances the steepness and precision of gene expression boundaries TR Sokolowski, T Erdmann, PR Ten Wolde PLoS Comput Biol 8 (8), e1002654, 2012 | 65 | 2012 |
Optimizing information flow in small genetic networks. IV. Spatial coupling TR Sokolowski, G Tkačik Phys Rev E 91 (6), 062710, 2015 | 47 | 2015 |
eGFRD in all dimensions TR Sokolowski, J Paijmans, L Bossen, M Wehrens, T Miedema, ... J Chem Phys 150 (5), 054108, 2019 | 44 | 2019 |
Statistical analysis and optimality of neural systems W Młynarski, M Hledík, TR Sokolowski, G Tkačik Neuron 109 (7), 1227-1241. e5, 2021 | 32 | 2021 |
Extending the dynamic range of transcription factor action by translational regulation TR Sokolowski, AM Walczak, W Bialek, G Tkačik Phys Rev E 93 (2), 022404, 2016 | 12 | 2016 |
Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells P Recouvreux, TR Sokolowski, A Grammoustianou, PR ten Wolde, ... Proc Natl Acad Sci USA 113 (7), 1811-1816, 2016 | 10 | 2016 |
Spatial-Stochastic Simulation of Reaction-Diffusion Systems TR Sokolowski, PR ten Wolde B Munsky, WS Hlavacek, LS Tsimring (ed.), "Quantitative Biology: Theory …, 2018 | 9 | 2018 |
A Tight Upper Bound on Mutual Information M Hledík, TR Sokolowski, G Tkačik 2019 IEEE Information Theory Workshop (ITW), 1-5, 2019 | 7 | 2019 |
A computational study of robust formation of spatial protein patterns TR Sokolowski Ph.D. thesis, Vrije Universiteit Amsterdam, ISBN 978-90-77209-72-1 …, 2013 | 5 | 2013 |
Deriving a genetic regulatory network from an optimization principle TR Sokolowski, T Gregor, W Bialek, G Tkačik arXiv preprint arXiv:2302.05680, 2023 | 4 | 2023 |
Green’s Function Reaction Dynamics—An Exact and Efficient Way To simulate Intracellular Pattern Formation T Sokolowski, L Bossen, T Miedema, N Becker AIP Conference Proceedings 1281 (1), 1342-1345, 2010 | 3 | 2010 |
Long-range k-core percolation CF Moukarzel, T Sokolowski J. Phys.: Conf. Ser 246, 012019, 2010 | 3 | 2010 |
Comparing AI versus Optimization Workflows for Simulation-Based Inference of Spatial-Stochastic Systems MA Ramirez-Sierra, TR Sokolowski arXiv preprint arXiv:2407.10938, 2024 | 1 | 2024 |
AI-powered simulation-based inference of a genuinely spatial-stochastic model of early mouse embryogenesis MA Ramírez-Sierra, TR Sokolowski arXiv preprint arXiv:2402.15330, 2024 | 1 | 2024 |
Information theory entering soils and tissues TR Sokolowski Cell Systems 13 (7), 511-513, 2022 | 1 | 2022 |
Stable developmental patterns of gene expression without morphogen gradients M Majka, NB Becker, PR Wolde, M Zagorski, TR Sokolowski arXiv preprint arXiv:2306.00537, 2023 | | 2023 |