| Initial community evenness favours functionality under selective stress L Wittebolle, M Marzorati, L Clement, A Balloi, D Daffonchio, K Heylen, ... Nature 458 (7238), 623-626, 2009 | 1103 | 2009 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1201, 2020 | 540 | 2020 |
| Leaf responses to mild drought stress in natural variants of Arabidopsis P Clauw, F Coppens, K De Beuf, S Dhondt, T Van Daele, K Maleux, ... Plant physiology 167 (3), 800-816, 2015 | 240 | 2015 |
| Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis S Swinnen, K Schaerlaekens, T Pais, J Claesen, G Hubmann, Y Yang, ... Genome Research, 2012 | 215 | 2012 |
| Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ... Genome biology 19, 1-17, 2018 | 214 | 2018 |
| Measuring the biodiversity of microbial communities by flow cytometry R Props, P Monsieurs, M Mysara, L Clement, N Boon Methods in Ecology and Evolution 7 (11), 1376-1385, 2016 | 206 | 2016 |
| Probabilistic index models O Thas, JD Neve, L Clement, JP Ottoy Journal of the Royal Statistical Society Series B: Statistical Methodology …, 2012 | 166 | 2012 |
| Flow cytometry for fast microbial community fingerprinting K De Roy, L Clement, O Thas, Y Wang, N Boon Water research, 2011 | 163 | 2011 |
| RNA sequencing data: hitchhiker's guide to expression analysis K Van den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, MI Love, ... Annual Review of Biomedical Data Science 2 (1), 139-173, 2019 | 157 | 2019 |
| Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units L Joos, S Beirinckx, A Haegeman, J Debode, B Vandecasteele, S Baeyen, ... BMC genomics 21, 1-17, 2020 | 109 | 2020 |
| stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage K Van den Berge, C Soneson, MD Robinson, L Clement Genome biology 18, 1-14, 2017 | 108 | 2017 |
| Peptide-level robust ridge regression improves estimation, sensitivity, and specificity in data-dependent quantitative label-free shotgun proteomics LJE Goeminne, K Gevaert, L Clement Molecular & Cellular Proteomics 15 (2), 657-668, 2016 | 107 | 2016 |
| Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob LJE Goeminne, K Gevaert, L Clement Journal of proteomics 171, 23-36, 2018 | 92 | 2018 |
| Faecal proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosis G Debyser, B Mesuere, L Clement, J Van de Weygaert, P Van Hecke, ... Journal of Cystic Fibrosis 15 (2), 242-250, 2016 | 91 | 2016 |
| QTL analysis of high thermotolerance with superior and downgraded parental yeast strains reveals new minor QTLs and converges on novel causative alleles involved in RNA processing Y Yang, MR Foulquié-Moreno, L Clement, E Erdei, A Tanghe, ... PLoS genetics 9 (8), e1003693, 2013 | 83 | 2013 |
| A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta S Moeys, J Frenkel, C Lembke, JTF Gillard, V Devos, K Van den Berge, ... Scientific Reports 6 (1), 19252, 2016 | 80 | 2016 |
| VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering BMP Verbist, K Thys, J Reumers, Y Wetzels, K Van der Borght, W Talloen, ... Bioinformatics 31 (1), 94-101, 2015 | 73 | 2015 |
| Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection C De Tender, A Haegeman, B Vandecasteele, L Clement, P Cremelie, ... Frontiers in microbiology 7, 2062, 2016 | 71 | 2016 |
| moFF: a robust and automated approach to extract peptide ion intensities A Argentini, LJE Goeminne, K Verheggen, N Hulstaert, A Staes, ... Nature methods 13 (12), 964-966, 2016 | 64 | 2016 |
| MSqRob takes the missing hurdle: uniting intensity-and count-based proteomics LJE Goeminne, A Sticker, L Martens, K Gevaert, L Clement Analytical chemistry 92 (9), 6278-6287, 2020 | 61 | 2020 |
Koen Van den BergeJ&J Innovative MedicineVerified email at berkeley.edu
