Jian Wang
Jian Wang
Assistant Professor, Penn State University College of Medicine
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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis
J Wang, K Mao, Y Zhao, C Zeng, J Xiang, Y Zhang, Y Xiao
Nucleic acids research 45 (11), 6299-6309, 2017
Mapping allosteric communications within individual proteins
J Wang, A Jain, LR McDonald, C Gambogi, AL Lee, NV Dokholyan
Nature communications 11 (1), 3862, 2020
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
RNA 26 (8), 982-995, 2020
3dRNA v2. 0: an updated web server for RNA 3D structure prediction
J Wang, J Wang, Y Huang, Y Xiao
International journal of molecular sciences 20 (17), 4116, 2019
3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures
J Wang, Y Zhao, C Zhu, Y Xiao
Nucleic acids research 43 (10), e63-e63, 2015
RNA–DNA fibers and polygons with controlled immunorecognition activate RNAi, FRET and transcriptional regulation of NF-κB in human cells
W Ke, E Hong, RF Saito, MC Rangel, J Wang, M Viard, M Richardson, ...
Nucleic Acids Research, 2018
MedusaDock 2.0: Efficient and Accurate Protein-Ligand Docking With Constraints
J Wang, NV Dokholyan
Journal of Chemical Information and Modeling, 2019
AlphaFold illuminates half of the dark human proteins
JL Binder, J Berendzen, AO Stevens, Y He, J Wang, NV Dokholyan, ...
Current Opinion in Structural Biology 74, 102372, 2022
Using 3dRNA for RNA 3‐D Structure Prediction and Evaluation
J Wang, Y Xiao
Current Protocols in bioinformatics 57 (1), 5.9. 1-5.9. 12, 2017
Drug discovery approaches using quantum machine learning
J Li, M Alam, MS Congzhou, J Wang, NV Dokholyan, S Ghosh
2021 58th ACM/IEEE Design Automation Conference (DAC), 1356-1359, 2021
Modifications to the framework regions eliminate chimeric antigen receptor tonic signaling
E Landoni, G Fucá, J Wang, VR Chirasani, Z Yao, E Dukhovlinova, ...
Cancer immunology research 9 (4), 441-453, 2021
Direct mapping of higher-order RNA interactions by SHAPE-JuMP
T Christy, C Giannetti, G Houlihan, M Smola, G Rice, J Wang, ...
Biochemistry, 2021
Predicting protein–ligand docking structure with graph neural network
H Jiang, J Wang, W Cong, Y Huang, M Ramezani, A Sarma, ...
Journal of chemical information and modeling 62 (12), 2923-2932, 2022
Guiding conventional Protein–Ligand docking software with convolutional neural networks
H Jiang, M Fan, J Wang, A Sarma, S Mohanty, NV Dokholyan, M Mahdavi, ...
Journal of Chemical Information and Modeling 60 (10), 4594-4602, 2020
Various miRNAs compensate the role of miR-122 on HCV replication
C Ono, T Fukuhara, S Li, J Wang, A Sato, T Izumi, Y Fauzyah, ...
PLoS pathogens 16 (6), e1008308, 2020
GPU-Accelerated Flexible Molecular Docking
M Fan, J Wang, H Jiang, Y Feng, M Mahdavi, K Madduri, MT Kandemir, ...
The Journal of Physical Chemistry B, 2021
Limits in accuracy and a strategy of RNA structure prediction using experimental information
J Wang, B Williams, VR Chirasani, A Krokhotin, R Das, NV Dokholyan.
Nucleic acids research 47 (11), 5563–5572, 2019
Yuel: Improving the Generalizability of Structure-Free Compound–Protein Interaction Prediction
J Wang, NV Dokholyan
Journal of chemical information and modeling 62 (3), 463-471, 2022
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