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Ye Zhan
Ye Zhan
Research Scientist
Verified email at umassmed.edu
Title
Cited by
Cited by
Year
Mediator and cohesin connect gene expression and chromatin architecture
MH Kagey, JJ Newman, S Bilodeau, Y Zhan, DA Orlando, NL van Berkum, ...
Nature 467 (7314), 430-435, 2010
22022010
Hi–C: a comprehensive technique to capture the conformation of genomes
JM Belton, RP McCord, JH Gibcus, N Naumova, Y Zhan, J Dekker
Methods 58 (3), 268-276, 2012
10392012
Organization of the mitotic chromosome
N Naumova, M Imakaev, G Fudenberg, Y Zhan, BR Lajoie, LA Mirny, ...
Science 342 (6161), 948-953, 2013
10102013
Patterns of growth and decline in lung function in persistent childhood asthma
MJ McGeachie, KP Yates, X Zhou, F Guo, AL Sternberg, ML Van Natta, ...
New England Journal of Medicine 374 (19), 1842-1852, 2016
5812016
Genome-wide maps of nuclear lamina interactions in single human cells
J Kind, L Pagie, SS de Vries, L Nahidiazar, SS Dey, M Bienko, Y Zhan, ...
Cell 163 (1), 134-147, 2015
4792015
Structural organization of the inactive X chromosome in the mouse
L Giorgetti, BR Lajoie, AC Carter, M Attia, Y Zhan, J Xu, CJ Chen, ...
Nature 535 (7613), 575-579, 2016
4152016
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
VC Seitan, AJ Faure, Y Zhan, RP McCord, BR Lajoie, E Ing-Simmons, ...
Genome research 23 (12), 2066-2077, 2013
3642013
Correlated alterations in genome organization, histone methylation, and DNA–lamin A/C interactions in Hutchinson-Gilford progeria syndrome
RP McCord, A Nazario-Toole, H Zhang, PS Chines, Y Zhan, MR Erdos, ...
Genome research 23 (2), 260-269, 2013
3452013
MORC family ATPases required for heterochromatin condensation and gene silencing
G Moissiard, SJ Cokus, J Cary, S Feng, AC Billi, H Stroud, D Husmann, ...
Science 336 (6087), 1448-1451, 2012
3182012
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
3112018
Analysis of long-range chromatin interactions using Chromosome Conformation Capture
N Naumova, EM Smith, Y Zhan, J Dekker
Methods 58 (3), 192-203, 2012
1952012
The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
E Rodríguez-Carballo, L Lopez-Delisle, Y Zhan, PJ Fabre, L Beccari, ...
Genes & development 31 (22), 2264-2281, 2017
1712017
SPEN integrates transcriptional and epigenetic control of X-inactivation
F Dossin, I Pinheiro, JJ Żylicz, J Roensch, S Collombet, A Le Saux, ...
Nature 578 (7795), 455-460, 2020
1542020
Nox4 is critical for hypoxia-inducible factor 2-α transcriptional activity in von Hippel-Lindau–deficient renal cell carcinoma
JK Maranchie, Y Zhan
Cancer research 65 (20), 9190-9193, 2005
1412005
Measuring the reproducibility and quality of Hi-C data
GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ...
Genome biology 20, 1-19, 2019
1012019
The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome
MR Gdula, TB Nesterova, G Pintacuda, J Godwin, Y Zhan, H Ozadam, ...
Nature communications 10 (1), 30, 2019
932019
Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts
SS Gisselbrecht, A Palagi, JV Kurland, JM Rogers, H Ozadam, Y Zhan, ...
Molecular cell 77 (2), 324-337. e8, 2020
922020
High-affinity sites form an interaction network to facilitate spreading of the MSL complex across the X chromosome in Drosophila
F Ramirez, T Lingg, S Toscano, KC Lam, P Georgiev, HR Chung, ...
Molecular cell 60 (1), 146-162, 2015
852015
Measuring the reproducibility and quality of Hi-C data
GG Yardimci, H Ozadam, BR Lajoie, Y Zhan, J Dekker, WS Noble
822019
NADPH oxidase NOX4 supports renal tumorigenesis by promoting the expression and nuclear accumulation of HIF2α
JL Gregg, RM Turner, G Chang, D Joshi, Y Zhan, L Chen, JK Maranchie
Cancer research 74 (13), 3501-3511, 2014
722014
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