Follow
Melissa Cline
Melissa Cline
Associate Research Scientist, UC Santa Cruz Genomics Institute
Verified email at ucsc.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
140052012
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
27412007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
19242014
The UCSC genome browser database: update 2011
PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ...
Nucleic acids research 39 (suppl_1), D876-D882, 2010
12802010
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
10182017
The UCSC Genome Browser database: extensions and updates 2013
LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ...
Nucleic acids research 41 (D1), D64-D69, 2012
9022012
The UCSC genome browser database: 2014 update
D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ...
Nucleic acids research 42 (D1), D764-D770, 2014
7732014
NetAffx: affymetrix probeset annotations
G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ...
Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002
6362002
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
5982007
Nova regulates brain-specific splicing to shape the synapse
J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ...
Nature genetics 37 (8), 844-852, 2005
5932005
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
4952014
The UCSC Genome Browser database: extensions and updates 2011
TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ...
Nucleic acids research 40 (D1), D918-D923, 2012
4142012
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187-193, 2010
3752010
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
3742012
An encyclopedia of mouse DNA elements (Mouse ENCODE)
Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ...
Genome biology 13, 1-5, 2012
3712012
Integrated molecular characterization of uterine carcinosarcoma
AD Cherniack, H Shen, V Walter, C Stewart, BA Murray, R Bowlby, X Hu, ...
Cancer cell 31 (3), 411-423, 2017
3652017
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ...
Nucleic acids research 40 (D1), D912-D917, 2012
3282012
The UCSC cancer genomics browser: update 2015
M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ...
Nucleic acids research 43 (D1), D812-D817, 2015
2982015
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser
MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu
Scientific reports 3 (1), 2652, 2013
2922013
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
N Salomonis, CR Schlieve, L Pereira, C Wahlquist, A Colas, AC Zambon, ...
Proceedings of the National Academy of Sciences 107 (23), 10514-10519, 2010
2622010
The system can't perform the operation now. Try again later.
Articles 1–20