| Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction J Funke, FD Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ... arXiv preprint arXiv:1709.02974, 2017 | 235* | 2017 |
| Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy JS Phelps, DGC Hildebrand, BJ Graham, AT Kuan, LA Thomas, ... Cell 184 (3), 759-774. e18, 2021 | 202 | 2021 |
| Whole-cell organelle segmentation in volume electron microscopy L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic, N Eckstein, ... Nature 599 (7883), 141-146, 2021 | 181 | 2021 |
| Dense neuronal reconstruction through X-ray holographic nano-tomography AT Kuan Biophysical Journal 118 (3), 290a, 2020 | 128 | 2020 |
| Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set J Buhmann, A Sheridan, C Malin-Mayor, P Schlegel, S Gerhard, ... Nature methods 18 (7), 771-774, 2021 | 122 | 2021 |
| Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster N Eckstein, AS Bates, A Champion, M Du, Y Yin, P Schlegel, AKY Lu, ... Cell 187 (10), 2574-2594. e23, 2024 | 108 | 2024 |
| Neuronal wiring diagram of an adult brain S Dorkenwald, A Matsliah, AR Sterling, P Schlegel, SC Yu, CE McKellar, ... bioRxiv, 2023 | 99 | 2023 |
| Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain L Heinrich, J Funke, C Pape, J Nunez-Iglesias, S Saalfeld Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018 | 86 | 2018 |
| Efficient automatic 3D-reconstruction of branching neurons from EM data J Funke, B Andres, FA Hamprecht, A Cardona, M Cook 2012 IEEE Conference on Computer Vision and Pattern Recognition, 1004-1011, 2012 | 79 | 2012 |
| Accurate and linear time pose estimation from points and lines A Vakhitov, J Funke, F Moreno-Noguer European Conference on Computer Vision, 583-599, 2016 | 78 | 2016 |
| Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems F Tschopp, JNP Martel, SC Turaga, M Cook, J Funke ISBI, 1225-1228, 2016 | 66 | 2016 |
| Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine F Jug, T Pietzsch, D Kainmüller, J Funke, M Kaiser, E van Nimwegen, ... Bayesian and graphical Models for Biomedical Imaging: First International …, 2014 | 46 | 2014 |
| Segmented anisotropic sstem dataset of neural tissue S Gerhard, J Funke, J Martel, A Cardona, R Fetter figshare, 0-0, 2013 | 45 | 2013 |
| Local shape descriptors for neuron segmentation A Sheridan, TM Nguyen, D Deb, WCA Lee, S Saalfeld, SC Turaga, ... Nature methods 20 (2), 295-303, 2023 | 44 | 2023 |
| A Connectome of the Male Drosophila Ventral Nerve Cord S Takemura, KJ Hayworth, GB Huang, M Januszewski, Z Lu, EC Marin, ... BioRxiv, 2023.06. 05.543757, 2023 | 41 | 2023 |
| Structured cerebellar connectivity supports resilient pattern separation TM Nguyen, LA Thomas, JL Rhoades, I Ricchi, XC Yuan, A Sheridan, ... Nature 613 (7944), 543-549, 2023 | 41* | 2023 |
| Learning to segment: Training hierarchical segmentation under a topological loss J Funke, FA Hamprecht, C Zhang Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th …, 2015 | 27 | 2015 |
| Neural network organization for courtship-song feature detection in Drosophila CA Baker, C McKellar, R Pang, A Nern, S Dorkenwald, DA Pacheco, ... Current Biology 32 (15), 3317-3333. e7, 2022 | 25 | 2022 |
| Hierarchical architecture of dopaminergic circuits enables second-order conditioning in Drosophila D Yamada, D Bushey, F Li, KL Hibbard, M Sammons, J Funke, ... Elife 12, e79042, 2023 | 24 | 2023 |
| A framework for evaluating visual slam J Funke, T Pietzsch Proceedings of the British Machine Vision Conference (BMVC) 6, 2009 | 24 | 2009 |
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
