| Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ... Science Advances, eabc5801, 2020 | 1240 | 2020 |
| Trajectory-based differential expression analysis for single-cell sequencing data K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ... Nature communications 11 (1), 1201, 2020 | 540 | 2020 |
| A multimodal cell census and atlas of the mammalian primary motor cortex Principal manuscript editors, Analysis coordination, ... Nature 598 (7879), 86-102, 2021 | 331 | 2021 |
| A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ... Nature 598 (7879), 103-110, 2021 | 299* | 2021 |
| Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ... Genome Biology 19 (24), 250126, 2018 | 214 | 2018 |
| RNA sequencing data: hitchhiker's guide to expression analysis K Van Den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, ... Annual Review of Biomedical Data Science 2, 2019 | 157 | 2019 |
| stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage K Van den Berge, C Soneson, MD Robinson, L Clement Genome biology 18 (1), 151, 2017 | 109 | 2017 |
| Hierarchical community detection by recursive partitioning T Li, L Lei, S Bhattacharyya, K Van den Berge, P Sarkar, PJ Bickel, ... Journal of the American Statistical Association 117 (538), 951-968, 2022 | 88 | 2022 |
| A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta S Moeys, J Frenkel, C Lembke, JTF Gillard, V Devos, K Van den Berge, ... Scientific Reports 6 (1), 19252, 2016 | 80 | 2016 |
| Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds F Stock, G Bilcke, S De Decker, CM Osuna-Cruz, K Van den Berge, ... Frontiers in Microbiology 11, 1240, 2020 | 33 | 2020 |
| Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta G Bilcke, K Van den Berge, S De Decker, E Bonneure, N Poulsen, ... The ISME Journal 15 (2), 562-576, 2021 | 29 | 2021 |
| Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline E Pinseel, T Nakov, K Van den Berge, KM Downey, KJ Judy, ... The ISME Journal 16 (7), 1776-1787, 2022 | 26 | 2022 |
| satuRn: scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications J Gilis, K Vitting-Seerup, K Van den Berge, L Clement F1000Research 10, 374, 2022 | 23 | 2022 |
| A multimodal cell census and atlas of the mammalian primary motor cortex BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ... Biorxiv, 2020.10. 19.343129, 2020 | 22 | 2020 |
| A guide to trajectory inference and RNA velocity P Weiler, K Van den Berge, K Street, S Tiberi Single Cell Transcriptomics: Methods and Protocols, 269-292, 2022 | 17 | 2022 |
| Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression HR de Bézieux, K Van den Berge, K Street, S Dudoit BioRxiv, 2021.03. 09.433671, 2021 | 15 | 2021 |
| Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects K Van den Berge, HJ Chou, HR de Bézieux, K Street, D Risso, J Ngai, ... Cell Reports Methods 2 (11), 2022 | 11 | 2022 |
| Effect of management and age of ploughed out grass–clover on forage maize yield and residual soil nitrogen M Cougnon, K Van Den Berge, T D'Hose, L Clement, D Reheul The Journal of Agricultural Science 156 (6), 748-757, 2018 | 11 | 2018 |
| Trajectory inference across multiple conditions with condiments H Roux de Bézieux, K Van den Berge, K Street, S Dudoit Nature Communications 15 (1), 833, 2024 | 9 | 2024 |
| Altering the Sex Pheromone Cyclo(l-Pro-l-Pro) of the Diatom Seminavis robusta towards a Chemical Probe E Bonneure, A De Baets, S De Decker, K Van den Berge, L Clement, ... International Journal of Molecular Sciences 22 (3), 1037, 2021 | 9 | 2021 |
Lieven ClementAssociate Professor in Statistical Genomics, Ghent UniversityVerified email at ugent.be
