| Count-based differential expression analysis of RNA sequencing data using R and Bioconductor S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ... Nature protocols 8 (9), 1765-1786, 2013 | 1231 | 2013 |
| Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases A Pierce, RD Unwin, CA Evans, S Griffiths, L Carney, L Zhang, ... Molecular & Cellular Proteomics 7 (5), 853-863, 2008 | 342 | 2008 |
| Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations MJ Okoniewski, CJ Miller BMC bioinformatics 7, 1-14, 2006 | 274 | 2006 |
| Autoregulation of the nonsense-mediated mRNA decay pathway in human cells H Yepiskoposyan, F Aeschimann, D Nilsson, M Okoniewski, ... Rna 17 (12), 2108-2118, 2011 | 269 | 2011 |
| Sox10 promotes the formation and maintenance of giant congenital naevi and melanoma O Shakhova, D Zingg, SM Schaefer, L Hari, G Civenni, J Blunschi, ... Nature cell biology 14 (8), 882-890, 2012 | 261 | 2012 |
| The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets–improving meta-analysis and prediction of prognosis AH Sims, GJ Smethurst, Y Hey, MJ Okoniewski, SD Pepper, A Howell, ... BMC medical genomics 1, 1-14, 2008 | 181 | 2008 |
| microRNA profiling in Epstein–Barr virus-associated B-cell lymphoma J Imig, N Motsch, JY Zhu, S Barth, M Okoniewski, T Reineke, M Tinguely, ... Nucleic acids research 39 (5), 1880-1893, 2011 | 176 | 2011 |
| Complement is a central mediator of radiotherapy-induced tumor-specific immunity and clinical response L Surace, V Lysenko, AO Fontana, V Cecconi, H Janssen, A Bicvic, ... Immunity 42 (4), 767-777, 2015 | 153 | 2015 |
| SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision MS Wiewiórka, A Messina, A Pacholewska, S Maffioletti, P Gawrysiak, ... Bioinformatics 30 (18), 2652-2653, 2014 | 138 | 2014 |
| New insights into the performance of human whole-exome capture platforms J Meienberg, K Zerjavic, I Keller, M Okoniewski, A Patrignani, K Ludin, ... Nucleic acids research 43 (11), e76-e76, 2015 | 131 | 2015 |
| Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within … AB Hehl, WU Basso, C Lippuner, C Ramakrishnan, M Okoniewski, ... BMC genomics 16 (1), 1-16, 2015 | 100 | 2015 |
| Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal … F Allie, EJ Pierce, MJ Okoniewski, C Rey BMC genomics 15, 1-30, 2014 | 92 | 2014 |
| RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis RA Walker, PA Sharman, CM Miller, C Lippuner, M Okoniewski, ... BMC genomics 16 (1), 1-20, 2015 | 91 | 2015 |
| X: Map: annotation and visualization of genome structure for Affymetrix exon array analysis T Yates, MJ Okoniewski, CJ Miller Nucleic acids research 36 (suppl_1), D780-D786, 2007 | 87 | 2007 |
| Radiotherapy of human sarcoma promotes an intratumoral immune effector signature A Sharma, B Bode, G Studer, H Moch, M Okoniewski, A Knuth, ... Clinical Cancer Research 19 (17), 4843-4853, 2013 | 74 | 2013 |
| Wnt/β-catenin signaling regulates sequential fate decisions of murine cortical precursor cells K Draganova, M Zemke, L Zurkirchen, T Valenta, C Cantù, M Okoniewski, ... Stem cells 33 (1), 170-182, 2015 | 69 | 2015 |
| PGC-1α determines light damage susceptibility of the murine retina A Egger, M Samardzija, V Sothilingam, N Tanimoto, C Lange, S Salatino, ... PLoS One 7 (2), e31272, 2012 | 65 | 2012 |
| High correspondence between Affymetrix exon and standard expression arrays MJ Okoniewski, Y Hey, SD Pepper, CJ Miller Biotechniques 42 (2), 181-185, 2007 | 63 | 2007 |
| Comprehensive analysis of affymetrix exon arrays using BioConductor MJ Okoniewski, CJ Miller PLoS computational biology 4 (2), e6, 2008 | 60 | 2008 |
| Early insights into the function of KIAA1199, a markedly overexpressed protein in human colorectal tumors A Tiwari, M Schneider, A Fiorino, R Haider, MJ Okoniewski, B Roschitzki, ... PLoS One 8 (7), e69473, 2013 | 59 | 2013 |
Piotr GawrysiakWarsaw University of Technology, Institute of Computer ScienceVerified email at ii.pw.edu.pl
