| Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023 | 206 | 2023 |
| decoupleR: ensemble of computational methods to infer biological activities from omics data P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ... Bioinformatics Advances 2 (1), vbac016, 2022 | 143 | 2022 |
| Molecular consequences of SARS-CoV-2 liver tropism N Wanner, G Andrieux, P Badia-i-Mompel, C Edler, S Pfefferle, ... Nature metabolism 4 (3), 310-319, 2022 | 119 | 2022 |
| Gene regulatory network inference in the era of single-cell multi-omics P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ... Nature Reviews Genetics 24 (11), 739-754, 2023 | 69 | 2023 |
| Bioactivity descriptors for uncharacterized chemical compounds M Bertoni, M Duran-Frigola, P Badia-i-Mompel, E Pauls, M Orozco-Ruiz, ... Nature Communications 12 (1), 3932, 2021 | 48 | 2021 |
| A community challenge for a pancancer drug mechanism of action inference from perturbational profile data EF Douglass, RJ Allaway, B Szalai, W Wang, T Tian, A Fernández-Torras, ... Cell Reports Medicine 3 (1), 2022 | 39 | 2022 |
| Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ... Nucleic Acids Research 51 (20), 10934-10949, 2023 | 23 | 2023 |
| Spatial cell type mapping of multiple sclerosis lesions C Lerma-Martin, P Badia-i-Mompel, RO Ramirez Flores, P Sekol, ... bioRxiv, 2022.11. 03.514906, 2022 | 5 | 2022 |
| Bioactivity profile similarities to expand the repertoire of COVID-19 drugs M Duran-Frigola, M Bertoni, R Blanco, V Martínez, E Pauls, V Alcalde, ... Journal of Chemical Information and Modeling 60 (12), 5730-5734, 2020 | 5 | 2020 |
| Spatially resolved multiomics on the neuronal effects induced by spaceflight Y Masarapu, E Cekanaviciute, Z Andrusivova, JO Westholm, Å Björklund, ... | 2 | 2023 |
| Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results V Paton, A Gabor, RO Ramirez Flores, P Badia-i-Mompel, J Tanevski, ... bioRxiv, 2023.09. 13.557538, 2023 | | 2023 |
Julio Saez RodriguezHeidelberg UniversityVerified email at uni-heidelberg.de
