| Global landscape of protein complexes in the yeast Saccharomyces cerevisiae NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ... Nature 440 (7084), 637-643, 2006 | 3495 | 2006 |
| A map of the interactome network of the metazoan C. elegans S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, ... Science 303 (5657), 540-543, 2004 | 2201 | 2004 |
| High-quality binary protein interaction map of the yeast interactome network H Yu, P Braun, MA Yıldırım, I Lemmens, K Venkatesan, J Sahalie, ... Science 322 (5898), 104-110, 2008 | 1736 | 2008 |
| A Bayesian networks approach for predicting protein-protein interactions from genomic data R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, ... science 302 (5644), 449-453, 2003 | 1641 | 2003 |
| Detecting overlapping protein complexes in protein-protein interaction networks T Nepusz, H Yu, A Paccanaro Nature methods 9 (5), 471-472, 2012 | 1355 | 2012 |
| Genomic analysis of regulatory network dynamics reveals large topological changes NM Luscombe, M Madan Babu, H Yu, M Snyder, SA Teichmann, ... Nature 431 (7006), 308-312, 2004 | 1208 | 2004 |
| The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein PLoS computational biology 3 (4), e59, 2007 | 1151 | 2007 |
| An empirical framework for binary interactome mapping K Venkatesan, JF Rual, A Vazquez, U Stelzl, I Lemmens, ... Nature methods 6 (1), 83-90, 2009 | 1061 | 2009 |
| Annotation transfer between genomes: protein–protein interologs and protein–DNA regulogs H Yu, NM Luscombe, HX Lu, X Zhu, Y Xia, JDJ Han, N Bertin, S Chung, ... Genome research 14 (6), 1107-1118, 2004 | 689 | 2004 |
| Biochemical and genetic analysis of the yeast proteome with a movable ORF collection DM Gelperin, MA White, ML Wilkinson, Y Kon, LA Kung, KJ Wise, ... Genes & development 19 (23), 2816-2826, 2005 | 613 | 2005 |
| An experimentally derived confidence score for binary protein-protein interactions P Braun, M Tasan, M Dreze, M Barrios-Rodiles, I Lemmens, H Yu, ... Nature methods 6 (1), 91-97, 2009 | 495 | 2009 |
| HINT: High-quality protein interactomes and their applications in understanding human disease J Das, H Yu BMC systems biology 6, 1-12, 2012 | 463 | 2012 |
| Three-dimensional reconstruction of protein networks provides insight into human genetic disease X Wang, X Wei, B Thijssen, J Das, SM Lipkin, H Yu Nature biotechnology 30 (2), 159-164, 2012 | 449 | 2012 |
| Divergence of transcription factor binding sites across related yeast species AR Borneman, TA Gianoulis, ZD Zhang, H Yu, J Rozowsky, ... Science 317 (5839), 815-819, 2007 | 435 | 2007 |
| Integrative annotation of variants from 1092 humans: application to cancer genomics E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ... Science 342 (6154), 1235587, 2013 | 425 | 2013 |
| Edgetic perturbation models of human inherited disorders Q Zhong, N Simonis, QR Li, B Charloteaux, F Heuze, N Klitgord, S Tam, ... Molecular systems biology 5 (1), 321, 2009 | 420 | 2009 |
| Genomic analysis of the hierarchical structure of regulatory networks H Yu, M Gerstein Proceedings of the National Academy of Sciences 103 (40), 14724-14731, 2006 | 406 | 2006 |
| Genomic analysis of essentiality within protein networks H Yu, D Greenbaum, HX Lu, X Zhu, M Gerstein TRENDS in Genetics 20 (6), 227-231, 2004 | 387 | 2004 |
| Literature-curated protein interaction datasets ME Cusick, H Yu, A Smolyar, K Venkatesan, AR Carvunis, N Simonis, ... Nature methods 6 (1), 39-46, 2009 | 370 | 2009 |
| Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network N Simonis, JF Rual, AR Carvunis, M Tasan, I Lemmens, ... Nature methods 6 (1), 47-54, 2009 | 344 | 2009 |
