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Tomaž Curk
Tomaž Curk
University of Ljubljana, Faculty of Computer and Information Science
Verified email at fri.uni-lj.si - Homepage
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Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
22782013
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909-915, 2010
12102010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ...
Nature neuroscience 14 (4), 452-458, 2011
11972011
Orange: From experimental machine learning to interactive data mining
J Demšar, B Zupan, G Leban, T Curk
Knowledge Discovery in Databases: PKDD 2004: 8th European Conference on …, 2004
6232004
Comprehensive identification of RNA-binding domains in human cells
A Castello, B Fischer, CK Frese, R Horos, AM Alleaume, S Foehr, T Curk, ...
Molecular cell 63 (4), 696-710, 2016
5742016
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
BM Beckmann, R Horos, B Fischer, A Castello, K Eichelbaum, ...
Nature communications 6 (1), 10127, 2015
4492015
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain
B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ...
Scientific reports 2 (1), 603, 2012
3252012
SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export
M Müller-McNicoll, V Botti, AM de Jesus Domingues, H Brandl, ...
Genes & development 30 (5), 553-566, 2016
2872016
The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes
ML Änkö, M Müller-McNicoll, H Brandl, T Curk, C Gorup, I Henry, J Ule, ...
Genome biology 13, 1-17, 2012
2872012
ROC curve, lift chart and calibration plot
M Vuk, T Curk
Metodoloski zvezki 3 (1), 89, 2006
2752006
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ...
Genome research 21 (10), 1572-1582, 2011
2622011
iCLIP predicts the dual splicing effects of TIA-RNA interactions
Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ...
PLoS biology 8 (10), e1000530, 2010
2602010
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Y Sugimoto, J König, S Hussain, B Zupan, T Curk, M Frye, J Ule
Genome biology 13, 1-13, 2012
2572012
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
JoVE (Journal of Visualized Experiments), e2638, 2011
2412011
Conserved developmental transcriptomes in evolutionarily divergent species
A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ...
Genome biology 11, 1-12, 2010
2022010
Microarray data mining with visual programming
T Curk, J Demsar, Q Xu, G Leban, U Petrovic, I Bratko, G Shaulsky, ...
Bioinformatics 21 (3), 396-398, 2005
1972005
Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium
R Benabentos, S Hirose, R Sucgang, T Curk, M Katoh, EA Ostrowski, ...
Current biology 19 (7), 567-572, 2009
1642009
Recursive splicing in long vertebrate genes
CR Sibley, W Emmett, L Blazquez, A Faro, N Haberman, M Briese, ...
Nature 521 (7552), 371-375, 2015
1572015
The RNA-binding protein HuR is essential for the B cell antibody response
MD Diaz-Muńoz, SE Bell, K Fairfax, E Monzon-Casanova, ...
Nature immunology 16 (4), 415-425, 2015
1562015
Yeast as a cell factory: current state and perspectives
M Kavšček, M Stražar, T Curk, K Natter, U Petrovič
Microbial cell factories 14 (4), 2015
1392015
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