Elijah Roberts
MultiSeq: unifying sequence and structure data for evolutionary analysis
E Roberts, J Eargle, D Wright, Z Luthey-Schulten
BMC bioinformatics 7, 1-11, 2006
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation
E Roberts, JE Stone, Z Luthey‐Schulten
Journal of computational chemistry 34 (3), 245-255, 2013
Determining the stability of genetic switches: explicitly accounting for mRNA noise
M Assaf, E Roberts, Z Luthey-Schulten
Physical review letters 106 (24), 248102, 2011
Molecular signatures of ribosomal evolution
E Roberts, A Sethi, J Montoya, CR Woese, Z Luthey-Schulten
Proceedings of the National Academy of Sciences 105 (37), 13953-13958, 2008
Noise contributions in an inducible genetic switch: a whole-cell simulation study
E Roberts, A Magis, JO Ortiz, W Baumeister, Z Luthey-Schulten
PLoS computational biology 7 (3), e1002010, 2011
Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population
P Labhsetwar, JA Cole, E Roberts, ND Price, ZA Luthey-Schulten
Proceedings of the National Academy of Sciences 110 (34), 14006-14011, 2013
Extrinsic noise driven phenotype switching in a self-regulating gene
M Assaf, E Roberts, Z Luthey-Schulten, N Goldenfeld
Physical review letters 111 (5), 058102, 2013
Cooperation dilemma in finite populations under fluctuating environments
M Assaf, M Mobilia, E Roberts
Physical review letters 111 (23), 238101, 2013
Dynamics of simple gene-network motifs subject to extrinsic fluctuations
E Roberts, S Be'er, C Bohrer, R Sharma, M Assaf
Physical Review E 92 (6), 062717, 2015
Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations
MJ Hallock, JE Stone, E Roberts, C Fry, Z Luthey-Schulten
Parallel computing 40 (5-6), 86-99, 2014
DNA looping increases the range of bistability in a stochastic model of the lac genetic switch
TM Earnest, E Roberts, M Assaf, K Dahmen, Z Luthey-Schulten
Physical biology 10 (2), 026002, 2013
Long time-scale simulations of in vivo diffusion using GPU hardware
E Roberts, JE Stone, L Sepúlveda, WMW Hwu, Z Luthey-Schulten
2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009
A pairwise distance distribution correction (DDC) algorithm to eliminate blinking-caused artifacts in SMLM
CH Bohrer, X Yang, S Thakur, X Weng, B Tenner, R McQuillen, B Ross, ...
Nature methods 18 (6), 669-677, 2021
Neural network control of focal position during time-lapse microscopy of cells
L Wei, E Roberts
Scientific reports 8 (1), 7313, 2018
Natural variation in stochastic photoreceptor specification and color preference in Drosophila
C Anderson, I Reiss, C Zhou, A Cho, H Siddiqi, B Mormann, CM Avelis, ...
Elife 6, e29593, 2017
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
K Chen, E Roberts, Z Luthey-Schulten
BMC evolutionary biology 9, 1-17, 2009
Cytochrome c2 exit strategy: dissociation studies and evolutionary implications
TV Pogorelov, F Autenrieth, E Roberts, ZA Luthey-Schulten
The Journal of Physical Chemistry B 111 (3), 618-634, 2007
The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome
IM Nodelman, KC Horvath, RF Levendosky, J Winger, R Ren, A Patel, ...
Nucleic Acids Research 44 (16), 7580-7591, 2016
Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark
M Klein, R Sharma, CH Bohrer, CM Avelis, E Roberts
Bioinformatics 33 (2), 303-305, 2017
A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation
CH Bohrer, E Roberts
BMC biophysics 9, 1-13, 2015
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